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6ZO6

Minocycline binding to the deep binding pocket of AcrB-G619P

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005886cellular_componentplasma membrane
A0009410biological_processresponse to xenobiotic stimulus
A0009636biological_processresponse to toxic substance
A0015125molecular_functionbile acid transmembrane transporter activity
A0015562molecular_functionefflux transmembrane transporter activity
A0015567molecular_functionalkane transmembrane transporter activity
A0015721biological_processbile acid and bile salt transport
A0015895biological_processalkane transport
A0015908biological_processfatty acid transport
A0016020cellular_componentmembrane
A0022857molecular_functiontransmembrane transporter activity
A0042802molecular_functionidentical protein binding
A0042908biological_processxenobiotic transport
A0042910molecular_functionxenobiotic transmembrane transporter activity
A0042930biological_processenterobactin transport
A0042931molecular_functionenterobactin transmembrane transporter activity
A0046677biological_processresponse to antibiotic
A0055085biological_processtransmembrane transport
A0098567cellular_componentperiplasmic side of plasma membrane
A0140330biological_processxenobiotic detoxification by transmembrane export across the cell outer membrane
A1990281cellular_componentefflux pump complex
B0005515molecular_functionprotein binding
B0005886cellular_componentplasma membrane
B0009410biological_processresponse to xenobiotic stimulus
B0009636biological_processresponse to toxic substance
B0015125molecular_functionbile acid transmembrane transporter activity
B0015562molecular_functionefflux transmembrane transporter activity
B0015567molecular_functionalkane transmembrane transporter activity
B0015721biological_processbile acid and bile salt transport
B0015895biological_processalkane transport
B0015908biological_processfatty acid transport
B0016020cellular_componentmembrane
B0022857molecular_functiontransmembrane transporter activity
B0042802molecular_functionidentical protein binding
B0042908biological_processxenobiotic transport
B0042910molecular_functionxenobiotic transmembrane transporter activity
B0042930biological_processenterobactin transport
B0042931molecular_functionenterobactin transmembrane transporter activity
B0046677biological_processresponse to antibiotic
B0055085biological_processtransmembrane transport
B0098567cellular_componentperiplasmic side of plasma membrane
B0140330biological_processxenobiotic detoxification by transmembrane export across the cell outer membrane
B1990281cellular_componentefflux pump complex
C0005515molecular_functionprotein binding
C0005886cellular_componentplasma membrane
C0009410biological_processresponse to xenobiotic stimulus
C0009636biological_processresponse to toxic substance
C0015125molecular_functionbile acid transmembrane transporter activity
C0015562molecular_functionefflux transmembrane transporter activity
C0015567molecular_functionalkane transmembrane transporter activity
C0015721biological_processbile acid and bile salt transport
C0015895biological_processalkane transport
C0015908biological_processfatty acid transport
C0016020cellular_componentmembrane
C0022857molecular_functiontransmembrane transporter activity
C0042802molecular_functionidentical protein binding
C0042908biological_processxenobiotic transport
C0042910molecular_functionxenobiotic transmembrane transporter activity
C0042930biological_processenterobactin transport
C0042931molecular_functionenterobactin transmembrane transporter activity
C0046677biological_processresponse to antibiotic
C0055085biological_processtransmembrane transport
C0098567cellular_componentperiplasmic side of plasma membrane
C0140330biological_processxenobiotic detoxification by transmembrane export across the cell outer membrane
C1990281cellular_componentefflux pump complex
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue LMT A 1101
ChainResidue
ALEU28
AVAL32
AVAL341
AILE348
APHE380
AHOH1202
B8K61131

site_idAC2
Number of Residues5
Detailsbinding site for residue LMT A 1102
ChainResidue
ACYS887
ALEU891
CARG8
AGLY440
AGLY444

site_idAC3
Number of Residues6
Detailsbinding site for residue LMT A 1103
ChainResidue
ASER530
AGLY533
AARG536
AARG540
ATYR541
AHOH1341

site_idAC4
Number of Residues2
Detailsbinding site for residue DDQ A 1105
ChainResidue
APHE386
AARG468

site_idAC5
Number of Residues9
Detailsbinding site for residue GOL A 1106
ChainResidue
AGLY51
AGLY755
AMET774
AGOL1107
AHOH1204
AHOH1307
AHOH1382
CGLY221
CTHR222

site_idAC6
Number of Residues10
Detailsbinding site for residue GOL A 1107
ChainResidue
APRO50
AARG185
AGLU273
AGLY755
ATYR772
AMET774
AGOL1106
AHOH1203
AHOH1307
AHOH1347

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL A 1108
ChainResidue
AALA47
ASER48
AGLY126
ASER128
AEDO1115

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 1109
ChainResidue
AASP566
AGLU567
AASP568
ALYS643
AGLY998

site_idAC9
Number of Residues7
Detailsbinding site for residue GOL A 1110
ChainResidue
AGLU593
AHIS596
ATYR597
ALYS601
AHOH1424
BGLY227
BGLN229

site_idAD1
Number of Residues4
Detailsbinding site for residue GOL A 1111
ChainResidue
ASER742
AILE743
AASN744
AHOH1333

site_idAD2
Number of Residues1
Detailsbinding site for residue D12 A 1112
ChainResidue
ATRP895

site_idAD3
Number of Residues1
Detailsbinding site for residue HEX A 1113
ChainResidue
APHE885

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 1114
ChainResidue
APRO36
ATHR37
ASER389

site_idAD5
Number of Residues4
Detailsbinding site for residue EDO A 1115
ChainResidue
ASER128
AGLU130
AGLN176
AGOL1108

site_idAD6
Number of Residues3
Detailsbinding site for residue EDO A 1116
ChainResidue
ATHR243
AARG263
AHOH1464

site_idAD7
Number of Residues7
Detailsbinding site for residue PGE A 1117
ChainResidue
AASN144
ATHR148
AMET149
AASP153
AASP156
ASER319
AARG765

site_idAD8
Number of Residues9
Detailsbinding site for residue MIY B 1101
ChainResidue
BPHE178
BGLY179
BSER180
BASN274
BASP276
BILE277
BALA279
BPHE615
BHOH1272

site_idAD9
Number of Residues10
Detailsbinding site for residue LMT B 1102
ChainResidue
BSER530
BGLY533
BILE534
BARG536
BSER537
BTYR541
BPHE1020
BD101107
BHOH1278
DASP72

site_idAE1
Number of Residues6
Detailsbinding site for residue LMT B 1103
ChainResidue
BLYS509
BLYS510
BPHE512
BTRP515
BARG518
BGLY508

site_idAE2
Number of Residues10
Detailsbinding site for residue DDR B 1104
ChainResidue
BVAL452
BPHE459
BTYR467
BMET552
BTYR877
BSER880
BLEU881
BVAL905
BGLN928
BLEU931

site_idAE3
Number of Residues2
Detailsbinding site for residue DDQ B 1106
ChainResidue
ATRP13
BTRP895

site_idAE4
Number of Residues1
Detailsbinding site for residue D10 B 1107
ChainResidue
BLMT1102

site_idAE5
Number of Residues2
Detailsbinding site for residue D10 B 1108
ChainResidue
BASN298
BASP301

site_idAE6
Number of Residues3
Detailsbinding site for residue D10 B 1109
ChainResidue
BPHE11
CMET447
CCYS887

site_idAE7
Number of Residues8
Detailsbinding site for residue GOL B 1110
ChainResidue
AARG168
AGLU309
AHOH1286
BLEU75
BMET76
BTYR77
BMET78
BASN820

site_idAE8
Number of Residues7
Detailsbinding site for residue GOL B 1111
ChainResidue
BPHE358
BLEU359
BGLN360
BILE500
BASP504
BGLY506
BLYS509

site_idAE9
Number of Residues4
Detailsbinding site for residue GOL B 1112
ChainResidue
BGLU593
BTYR597
BALA654
BILE658

site_idAF1
Number of Residues2
Detailsbinding site for residue GOL B 1113
ChainResidue
BTHR238
CLYS728

site_idAF2
Number of Residues2
Detailsbinding site for residue CL B 1114
ChainResidue
BHIS692
BHOH1290

site_idAF3
Number of Residues1
Detailsbinding site for residue HEX B 1115
ChainResidue
BALA384

site_idAF4
Number of Residues2
Detailsbinding site for residue MYS B 1119
ChainResidue
BPHE885
BPHE899

site_idAF5
Number of Residues12
Detailsbinding site for residue PG4 B 1120
ChainResidue
AASN109
BGLN108
BGLN112
BMET115
BGLY126
BVAL127
BHOH1378
CGLN108
CGLN112
CMET115
CVAL127
CVAL129

site_idAF6
Number of Residues2
Detailsbinding site for residue EDO B 1121
ChainResidue
BGLU810
BTYR811

site_idAF7
Number of Residues3
Detailsbinding site for residue EDO B 1122
ChainResidue
BASN700
DARG23
DTRP57

site_idAF8
Number of Residues2
Detailsbinding site for residue EDO B 1123
ChainResidue
BGLY856
BTYR857

site_idAF9
Number of Residues5
Detailsbinding site for residue EDO B 1124
ChainResidue
AHOH1236
BARG185
BGLU273
BASN274
BMET774

site_idAG1
Number of Residues3
Detailsbinding site for residue EDO B 1125
ChainResidue
BASN189
BARG263
BASP264

site_idAG2
Number of Residues5
Detailsbinding site for residue EDO B 1126
ChainResidue
BSER46
BSER48
BGLN125
BGLY126
BSER128

site_idAG3
Number of Residues2
Detailsbinding site for residue EDO B 1127
ChainResidue
BHIS505
BARG973

site_idAG4
Number of Residues4
Detailsbinding site for residue EDO B 1128
ChainResidue
AALA209
BILE743
BASN744
BASN747

site_idAG5
Number of Residues4
Detailsbinding site for residue EDO B 1129
ChainResidue
BASN760
BASP761
CGLN120
CGLU121

site_idAG6
Number of Residues7
Detailsbinding site for residue EDO B 1130
ChainResidue
BPHE727
BPRO783
BILE786
BSER802
BSER805
BSER807
BHOH1368

site_idAG7
Number of Residues1
Detailsbinding site for residue 8K6 B 1131
ChainResidue
ALMT1101

site_idAG8
Number of Residues3
Detailsbinding site for residue R16 B 1132
ChainResidue
BLYS29
CVAL454
CSER875

site_idAG9
Number of Residues4
Detailsbinding site for residue SO4 B 1133
ChainResidue
BASN361
BPHE362
BARG363
BLYS498

site_idAH1
Number of Residues1
Detailsbinding site for residue C14 C 1101
ChainResidue
CTYR892

site_idAH2
Number of Residues6
Detailsbinding site for residue LMT C 1102
ChainResidue
CSER530
CGLY533
CARG536
CSER537
CTYR541
CDDQ1106

site_idAH3
Number of Residues7
Detailsbinding site for residue PTY C 1103
ChainResidue
BTRP13
CGLU893
CSER894
CTRP895
CSER896
CPHE1033
CSER1034

site_idAH4
Number of Residues1
Detailsbinding site for residue OCT C 1104
ChainResidue
CPHE380

site_idAH5
Number of Residues3
Detailsbinding site for residue OCT C 1105
ChainResidue
CPHE458
CARG468
CLPX1119

site_idAH6
Number of Residues2
Detailsbinding site for residue DDQ C 1106
ChainResidue
CSER530
CLMT1102

site_idAH7
Number of Residues2
Detailsbinding site for residue D10 C 1108
ChainResidue
CPHE556
CVAL557

site_idAH8
Number of Residues1
Detailsbinding site for residue D10 C 1109
ChainResidue
CALA384

site_idAH9
Number of Residues7
Detailsbinding site for residue GOL C 1110
ChainResidue
BHOH1354
CARG185
CGLU273
CGLY755
CGLY756
CTYR772
CHOH1401

site_idAI1
Number of Residues5
Detailsbinding site for residue GOL C 1111
ChainResidue
AVAL64
CTYR758
CASP761
CLYS770
CHOH1244

site_idAI2
Number of Residues2
Detailsbinding site for residue CL C 1113
ChainResidue
CLYS950
CARG1030

site_idAI3
Number of Residues1
Detailsbinding site for residue D12 C 1115
ChainResidue
CPHE4

site_idAI4
Number of Residues2
Detailsbinding site for residue HEX C 1117
ChainResidue
CALA385
CLPX1119

site_idAI5
Number of Residues10
Detailsbinding site for residue LPX C 1119
ChainResidue
CPHE388
CALA457
CARG468
CGLN469
CSER471
CSER476
CLEU480
COCT1105
CHEX1117
CHOH1286

site_idAI6
Number of Residues12
Detailsbinding site for residue 1PE C 1120
ChainResidue
CGLU339
CASP566
CGLU567
CASP568
CTRP634
CLYS643
CTHR993
CGLY994
CALA995
CSER997
CHOH1292
CHOH1299

site_idAI7
Number of Residues2
Detailsbinding site for residue EDO C 1121
ChainResidue
CGLY283
CGLN284

site_idAI8
Number of Residues4
Detailsbinding site for residue EDO C 1122
ChainResidue
CGLU607
CSER630
CLEU631
CASP633

site_idAI9
Number of Residues2
Detailsbinding site for residue EDO C 1123
ChainResidue
CGLN89
CSER134

site_idAJ1
Number of Residues5
Detailsbinding site for residue EDO C 1124
ChainResidue
CGLY675
CTHR676
CASP681
CGLU826
CLEU828

site_idAJ2
Number of Residues2
Detailsbinding site for residue EDO C 1125
ChainResidue
CLYS55
CGLY691

site_idAJ3
Number of Residues4
Detailsbinding site for residue EDO C 1126
ChainResidue
ATHR724
CGLN218
CASN231
CSER233

site_idAJ4
Number of Residues2
Detailsbinding site for residue EDO C 1127
ChainResidue
BLEU230
CTYR811

site_idAJ5
Number of Residues6
Detailsbinding site for residue EDO C 1128
ChainResidue
CASP83
CTHR85
CTHR87
CPRO619
CARG620
CHOH1450

site_idAJ6
Number of Residues6
Detailsbinding site for residue PGE C 1129
ChainResidue
BARG168
CMET69
CLEU75
CMET76
CMET78
CASN820

site_idAJ7
Number of Residues5
Detailsbinding site for residue EDO D 201
ChainResidue
BGLU693
DTYR56
DTRP57
DPHE90
DHIS92

site_idAJ8
Number of Residues3
Detailsbinding site for residue EDO D 202
ChainResidue
BTYR811
DARG23
DASP44

site_idAJ9
Number of Residues2
Detailsbinding site for residue EDO D 203
ChainResidue
DALA75
DTYR76

site_idAK1
Number of Residues3
Detailsbinding site for residue GOL E 201
ChainResidue
ATYR811
EARG23
EASP44

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues462
DetailsTOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:15919996
ChainResidueDetails
AMET1-PRO9
BGLU414-ILE438
BALA491-THR538
BALA889-PRO898
BLEU944-LEU972
BILE1019-HIS1049
CMET1-PRO9
CLEU357-THR365
CGLU414-ILE438
CALA491-THR538
CALA889-PRO898
ALEU357-THR365
CLEU944-LEU972
CILE1019-HIS1049
AGLU414-ILE438
AALA491-THR538
AALA889-PRO898
ALEU944-LEU972
AILE1019-HIS1049
BMET1-PRO9
BLEU357-THR365

site_idSWS_FT_FI2
Number of Residues54
DetailsTRANSMEM: Helical; Name=1
ChainResidueDetails
AILE10-LEU28
BILE10-LEU28
CILE10-LEU28

site_idSWS_FT_FI3
Number of Residues1932
DetailsTOPO_DOM: Periplasmic => ECO:0000269|PubMed:15919996
ChainResidueDetails
ALYS29-SER336
BPHE556-ASN871
BARG919-ASP924
BTHR993-GLY998
CLYS29-SER336
CPHE386-ASN391
CPHE458-ALA465
CPHE556-ASN871
CARG919-ASP924
CTHR993-GLY998
APHE386-ASN391
APHE458-ALA465
APHE556-ASN871
AARG919-ASP924
ATHR993-GLY998
BLYS29-SER336
BPHE386-ASN391
BPHE458-ALA465

site_idSWS_FT_FI4
Number of Residues57
DetailsTRANSMEM: Helical; Name=2
ChainResidueDetails
AILE337-TYR356
BILE337-TYR356
CILE337-TYR356

site_idSWS_FT_FI5
Number of Residues57
DetailsTRANSMEM: Helical; Name=3
ChainResidueDetails
ALEU366-ALA385
BLEU366-ALA385
CLEU366-ALA385

site_idSWS_FT_FI6
Number of Residues63
DetailsTRANSMEM: Helical; Name=4
ChainResidueDetails
ATHR392-VAL413
BTHR392-VAL413
CTHR392-VAL413

site_idSWS_FT_FI7
Number of Residues54
DetailsTRANSMEM: Helical; Name=5
ChainResidueDetails
AGLN439-ALA457
BGLN439-ALA457
CGLN439-ALA457

site_idSWS_FT_FI8
Number of Residues72
DetailsTRANSMEM: Helical; Name=6
ChainResidueDetails
AILE466-PRO490
BILE466-PRO490
CILE466-PRO490

site_idSWS_FT_FI9
Number of Residues48
DetailsTRANSMEM: Helical; Name=7
ChainResidueDetails
AGLY539-LEU555
BGLY539-LEU555
CGLY539-LEU555

site_idSWS_FT_FI10
Number of Residues48
DetailsTRANSMEM: Helical; Name=8
ChainResidueDetails
AGLN872-LEU888
BGLN872-LEU888
CGLN872-LEU888

site_idSWS_FT_FI11
Number of Residues57
DetailsTRANSMEM: Helical; Name=9
ChainResidueDetails
APHE899-PHE918
BPHE899-PHE918
CPHE899-PHE918

site_idSWS_FT_FI12
Number of Residues54
DetailsTRANSMEM: Helical; Name=10
ChainResidueDetails
AVAL925-ILE943
BVAL925-ILE943
CVAL925-ILE943

site_idSWS_FT_FI13
Number of Residues57
DetailsTRANSMEM: Helical; Name=11
ChainResidueDetails
AARG973-SER992
BARG973-SER992
CARG973-SER992

site_idSWS_FT_FI14
Number of Residues57
DetailsTRANSMEM: Helical; Name=12
ChainResidueDetails
AALA999-ALA1018
BALA999-ALA1018
CALA999-ALA1018

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