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6YZ1

The crystal structure of SARS-CoV-2 nsp10-nsp16 methyltransferase complex with Sinefungin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004483molecular_functionmethyltransferase cap1 activity
B0003723molecular_functionRNA binding
B0008270molecular_functionzinc ion binding
B0019079biological_processviral genome replication
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue SFG A 301
ChainResidue
AASN43
AASP114
ACYS115
AASP130
AMET131
ATYR132
AHOH415
AHOH439
AHOH447
AHOH462
AHOH535
ATYR47
AGLY71
AGLY73
ASER74
APRO80
AGLY81
AASP99
ALEU100

site_idAC2
Number of Residues5
Detailsbinding site for residue MES A 302
ChainResidue
AASN13
ATHR56
ALEU57
ATHR58
ATRP189

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN B 201
ChainResidue
BCYS74
BCYS77
BHIS83
BCYS90

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN B 202
ChainResidue
BCYS117
BCYS120
BCYS128
BCYS130

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues294
DetailsDomain: {"description":"Nidovirus-type SAM-dependent 2'-O-MTase","evidences":[{"source":"PROSITE-ProRule","id":"PRU01300","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues24
DetailsRepeat: {"description":"LRR 9","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01300","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01297","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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