Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YU1

CLK3 bound with beta-carboline KH-CARB13 (Cpd 3)

Functional Information from GO Data
ChainGOidnamespacecontents
a0004672molecular_functionprotein kinase activity
a0005524molecular_functionATP binding
a0006468biological_processprotein phosphorylation
c0004672molecular_functionprotein kinase activity
c0005524molecular_functionATP binding
c0006468biological_processprotein phosphorylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue EDO a 501
ChainResidue
aHIS331
aGLY350
aTRP351
aHOH662

site_idAC2
Number of Residues5
Detailsbinding site for residue EDO a 502
ChainResidue
aGLU387
aILE393
aGLY410
aGLY411
aLEU412

site_idAC3
Number of Residues4
Detailsbinding site for residue PO4 a 503
ChainResidue
aHIS330
aTHR332
aTHR333
cTHR333

site_idAC4
Number of Residues6
Detailsbinding site for residue PO4 a 504
ChainResidue
aARG189
aARG189
aLYS193
aLYS193
aTYR194
aTYR194

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO a 505
ChainResidue
aILE393
aPRO394
aSER395
aHOH727

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO a 506
ChainResidue
aGLU137
aASP138
aARG341
aHOH634

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO a 507
ChainResidue
aASP447
aHIS469
aPRO470
aHOH609
cHOH724

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO a 508
ChainResidue
aARG402
aLYS403
aLYS405
cHOH712

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO a 509
ChainResidue
aHIS259
aVAL311
aLYS312

site_idAD1
Number of Residues11
Detailsbinding site for residue KHC a 510
ChainResidue
aLEU162
aVAL170
aALA184
aPHE236
aLEU238
aLEU239
aGLY240
aLYS241
aASN242
aGLU245
aLEU290

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO c 501
ChainResidue
cLEU412
cVAL413
cVAL413
cTRP414
cTRP414
cHOH622
cHOH622
cHOH659

site_idAD3
Number of Residues5
Detailsbinding site for residue EDO c 502
ChainResidue
cSER125
cMET126
cGLU157
cHOH620
cHOH667

site_idAD4
Number of Residues8
Detailsbinding site for residue PG4 c 503
ChainResidue
aHIS328
aHOH709
cASN379
cARG402
cLYS403
cLYS405
cTYR406
cHOH649

site_idAD5
Number of Residues6
Detailsbinding site for residue PO4 c 504
ChainResidue
cARG189
cARG189
cLYS193
cLYS193
cTYR194
cTYR194

site_idAD6
Number of Residues6
Detailsbinding site for residue PG4 c 505
ChainResidue
aASN190
aGLY192
aARG195
cASN190
cGLY192
cARG195

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO c 506
ChainResidue
cCYS146
cARG147
cTHR337
cHIS339
cHOH608

site_idAD8
Number of Residues7
Detailsbinding site for residue EDO c 507
ChainResidue
cGLU387
cLYS388
cGLU416
cGLU416
cHOH615
cHOH626
cHOH746

site_idAD9
Number of Residues7
Detailsbinding site for residue EDO c 508
ChainResidue
cTRP151
cHOH601
cHOH616
cSER132
cSER135
cVAL145
cASP150

site_idAE1
Number of Residues4
Detailsbinding site for residue EDO c 509
ChainResidue
cGLY350
cPRO457
cHOH707
cHOH725

site_idAE2
Number of Residues4
Detailsbinding site for residue EDO c 510
ChainResidue
cARG451
cGLN459
cARG460
cGLU465

site_idAE3
Number of Residues4
Detailsbinding site for residue EDO c 511
ChainResidue
cGLN444
cPRO470
cHOH650
cHOH719

site_idAE4
Number of Residues6
Detailsbinding site for residue EDO c 512
ChainResidue
cARG147
cPHE244
cPRO286
cGLU287
cTYR340
cEDO513

site_idAE5
Number of Residues6
Detailsbinding site for residue EDO c 513
ChainResidue
cCYS146
cARG147
cILE148
cPHE244
cEDO512
cEDO516

site_idAE6
Number of Residues5
Detailsbinding site for residue EDO c 514
ChainResidue
aASP327
cHIS399
cTHR401
cARG402
cHOH648

site_idAE7
Number of Residues6
Detailsbinding site for residue EDO c 515
ChainResidue
cGLU387
cILE398
cGLY410
cGLY411
cLEU412
cASN417

site_idAE8
Number of Residues5
Detailsbinding site for residue EDO c 516
ChainResidue
cCYS146
cASN161
cGLU164
cLYS169
cEDO513

site_idAE9
Number of Residues4
Detailsbinding site for residue EDO c 517
ChainResidue
cHIS331
cGLY350
cTRP351
cHOH686

site_idAF1
Number of Residues7
Detailsbinding site for residue EDO c 518
ChainResidue
cPHE371
cTHR372
cLEU373
cGLN375
cASN427
cCYS428
cTYR434

site_idAF2
Number of Residues11
Detailsbinding site for residue KHC c 519
ChainResidue
cLEU162
cVAL170
cALA184
cLYS186
cPHE236
cLEU238
cLEU239
cGLY240
cLYS241
cASN242
cLEU290

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues25
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGEGTFGKVVeCldhargksq.........VALK
ChainResidueDetails
aLEU162-LYS186

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. LtHtDLKpeNILF
ChainResidueDetails
aLEU279-PHE291

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18691976","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon