Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YOO

Structure of SAMM50 LIR bound to GABARAPL1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0000421cellular_componentautophagosome membrane
A0000422biological_processautophagy of mitochondrion
A0005515molecular_functionprotein binding
A0005543molecular_functionphospholipid binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005776cellular_componentautophagosome
A0005783cellular_componentendoplasmic reticulum
A0005794cellular_componentGolgi apparatus
A0005829cellular_componentcytosol
A0005856cellular_componentcytoskeleton
A0005874cellular_componentmicrotubule
A0006914biological_processautophagy
A0006995biological_processcellular response to nitrogen starvation
A0008429molecular_functionphosphatidylethanolamine binding
A0016020cellular_componentmembrane
A0030659cellular_componentcytoplasmic vesicle membrane
A0030957molecular_functionTat protein binding
A0031410cellular_componentcytoplasmic vesicle
A0031625molecular_functionubiquitin protein ligase binding
A0048487molecular_functionbeta-tubulin binding
A0050811molecular_functionGABA receptor binding
A0061723biological_processglycophagy
A0097352biological_processautophagosome maturation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue EDO A 201
ChainResidue
AGLU12
ATYR13
AVAL41
APRO42
AHOH421

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 202
ChainResidue
AHOH305
AHOH419
AARG65
ALEU70
AARG71
APRO72

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 203
ChainResidue
AHIS9
AHIS69
ACL205
BGLU25

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 204
ChainResidue
AHIS99
AGLU112
ALYS117
AHOH337

site_idAC5
Number of Residues5
Detailsbinding site for residue CL A 205
ChainResidue
AHIS9
ATYR13
AHIS69
AZN203
BGLU25

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsSITE: (Microbial infection) Cleavage; by RavZ => ECO:0000269|PubMed:23112293
ChainResidueDetails
ATYR115

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Cleavage; by ATG4B => ECO:0000269|PubMed:20404487
ChainResidueDetails
AGLY116

site_idSWS_FT_FI3
Number of Residues1
DetailsLIPID: Phosphatidylserine amidated glycine; alternate => ECO:0000269|PubMed:33909989
ChainResidueDetails
AGLY116

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon