Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YMG

VcaM4I restriction endonuclease in complex with 5mC-modified dsDNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
B0004519molecular_functionendonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue CL A 401
ChainResidue
ALYS292
AGLN293

site_idAC2
Number of Residues2
Detailsbinding site for residue SO4 A 402
ChainResidue
ASER64
AHIS65

site_idAC3
Number of Residues2
Detailsbinding site for residue SO4 A 403
ChainResidue
ATHR164
AARG192

site_idAC4
Number of Residues6
Detailsbinding site for residue SO4 A 404
ChainResidue
AASN84
AASP85
AASP85
AALA83
AALA83
AASN84

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 A 405
ChainResidue
APRO135
AHIS136

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 406
ChainResidue
AHIS34
AASN37
ATYR117

site_idAC7
Number of Residues2
Detailsbinding site for residue SO4 B 401
ChainResidue
BSER64
BHIS65

site_idAC8
Number of Residues2
Detailsbinding site for residue SO4 B 402
ChainResidue
BPRO135
BHIS136

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 B 403
ChainResidue
BTHR164
BALA167
BARG192

site_idAD1
Number of Residues2
Detailsbinding site for residue SO4 B 404
ChainResidue
BHIS34
BASN37

site_idAD2
Number of Residues20
Detailsbinding site for Di-nucleotide DG E 5 and 5CM E 6
ChainResidue
BSER7
BGLN8
BLYS9
BGLN10
BTHR11
BGLU15
BTRP22
BASN27
BLYS28
BTYR36
BTRP82
BGLN128
BALA129
BTYR130
EDT4
EDG7
EHOH101
FDG6
FDC7
FDA8

site_idAD3
Number of Residues19
Detailsbinding site for Di-nucleotide 5CM E 6 and DG E 7
ChainResidue
BSER7
BGLN8
BLYS9
BGLN10
BTHR11
BGLU15
BTRP22
BTYR36
BTRP82
BGLY126
BASN127
BGLN128
BALA129
BTYR130
EDG5
EDC8
FDG4
FDC5
FDG6

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon