Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YL0

Crystal structure of YTHDC1 with compound T_96

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue OWH A 601
ChainResidue
AASN367
ASER378
ATHR379
ALEU380
ATRP428
AMET434
AASP476
AHOH754

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 602
ChainResidue
APRO431
AALA432
AHOH734
AHOH851
BHIS505
AASN363

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 603
ChainResidue
AHIS420
AHIS421
AHOH704

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 604
ChainResidue
AGLY344
ATHR345
ASER346
ALYS347
AHOH725

site_idAC5
Number of Residues7
Detailsbinding site for residue SO4 A 605
ChainResidue
AARG404
AARG475
AASP476
AHOH740
AHOH819
AHOH840
AHOH866

site_idAC6
Number of Residues7
Detailsbinding site for residue SO4 B 601
ChainResidue
BARG451
BGLU452
BHOH756
BHOH759
BHOH766
BHOH792
BHOH794

site_idAC7
Number of Residues11
Detailsbinding site for residue PEG B 602
ChainResidue
BGLU384
BLYS385
BASN388
BLYS457
BHOH701
BHOH708
BHOH712
BHOH713
BHOH777
BHOH837
BHOH874

site_idAC8
Number of Residues9
Detailsbinding site for residue OWH B 603
ChainResidue
BASN367
BSER378
BTHR379
BLEU380
BTRP428
BASP476
BHOH704
BHOH806
BHOH843

site_idAC9
Number of Residues11
Detailsbinding site for residue SO4 B 604
ChainResidue
ATRP465
AGLN478
AGLU479
AHOH776
BGLY344
BLYS347
BHOH724
BHOH727
BHOH846
BHOH852
BHOH861

site_idAD1
Number of Residues8
Detailsbinding site for residue SO4 B 605
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BHOH705
BHOH807
BHOH881
BHOH886

site_idAD2
Number of Residues6
Detailsbinding site for residue SO4 B 606
ChainResidue
BLYS361
BARG404
BARG475
BASP476
BHOH740
BHOH812

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
BLYS361
BASP476
AASP476
ALYS361

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon