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6YEN

Crystal structure of AmpC from E. coli with Taniborbactam (VNRX-5133)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue KJK A 401
ChainResidue
ASER64
AGLY320
AASN346
AHOH524
AHOH711
AGLN120
ATYR150
AASN152
AASN289
ALYS315
ATHR316
AALA318
ATHR319

site_idAC2
Number of Residues7
Detailsbinding site for residue MES A 402
ChainResidue
AGLN22
AGLN23
ALYS24
ATYR40
ATHR42
AGLN56
AHOH506

site_idAC3
Number of Residues1
Detailsbinding site for residue PEG A 403
ChainResidue
ATRP93

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 404
ChainResidue
APRO5
ALEU241
AGLN249
AHOH548
AHOH671

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO A 405
ChainResidue
AGLY36
ALYS37
AGLN235

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 406
ChainResidue
ALYS50
AGLY206
ALYS207
AALA208

site_idAC7
Number of Residues11
Detailsbinding site for residue K9K A 407
ChainResidue
ATHR97
AGLN136
AASN137
APRO140
AALA141
ATRP142
AHOH509
AHOH513
AHOH593
AHOH597
AHOH658

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN A 408
ChainResidue
AHIS13
AHIS13
AHIS13
ACL410
ACL410
ACL410

site_idAC9
Number of Residues3
Detailsbinding site for residue ZN A 409
ChainResidue
ATHR17
AGLU21
AHOH775

site_idAD1
Number of Residues6
Detailsbinding site for residue CL A 410
ChainResidue
AHIS13
AHIS13
AHIS13
AZN408
AZN408
AZN408

site_idAD2
Number of Residues2
Detailsbinding site for residue CL A 411
ChainResidue
AGLY320
AHOH727

site_idAD3
Number of Residues4
Detailsbinding site for residue CL A 412
ChainResidue
AGLU171
AGLN175
AILE189
AASN190

site_idAD4
Number of Residues4
Detailsbinding site for residue NA A 413
ChainResidue
AASP217
AHOH521
AHOH646
AHOH742

Functional Information from PROSITE/UniProt
site_idPS00336
Number of Residues8
DetailsBETA_LACTAMASE_C Beta-lactamase class-C active site. FELGSVSK
ChainResidueDetails
APHE60-LYS67

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Acyl-ester intermediate => ECO:0000255|PROSITE-ProRule:PRU10102, ECO:0000269|PubMed:6795623
ChainResidueDetails
ASER64

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
ATYR150

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALYS315

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PDB entries from 2024-05-15

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