Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YDB

Human wtSTING in complex with 2',2'-difluoro-3',3'-c-di-GMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0002218biological_processactivation of innate immune response
A0032481biological_processpositive regulation of type I interferon production
Functional Information from PDB Data
site_idAC1
Number of Residues27
Detailsbinding site for residue GGF A 401
ChainResidue
ASER162
ASER241
ASER241
AGLU260
AGLU260
ATHR263
ATHR263
APRO264
APRO264
AHOH506
AHOH506
ASER162
AHOH508
AHOH508
AHOH512
AHOH512
AHOH514
AHOH514
AHOH516
AHOH516
ATYR167
ATYR167
AILE235
AARG238
AARG238
ATYR240
ATYR240

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:22728660, ECO:0007744|PDB:4F5Y
ChainResidueDetails
ASER162

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:22579474, ECO:0000269|PubMed:22705373, ECO:0000269|PubMed:22728658, ECO:0000269|PubMed:22728659, ECO:0000269|PubMed:22728660, ECO:0007744|PDB:4EF4, ECO:0007744|PDB:4EMT, ECO:0007744|PDB:4F5D, ECO:0007744|PDB:4F5Y, ECO:0007744|PDB:4F9G
ChainResidueDetails
ATYR167

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:37379839, ECO:0007744|PDB:8GJX
ChainResidueDetails
AARG238

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:22579474, ECO:0000269|PubMed:22705373, ECO:0000269|PubMed:22728658, ECO:0000269|PubMed:22728660, ECO:0007744|PDB:4EF4, ECO:0007744|PDB:4EMT, ECO:0007744|PDB:4F5Y, ECO:0007744|PDB:4F9G
ChainResidueDetails
ATHR263

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:37832545
ChainResidueDetails
ATHR229

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:37832545
ChainResidueDetails
ASER241

site_idSWS_FT_FI7
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:19285439, ECO:0000269|PubMed:21074459
ChainResidueDetails
ALYS150

site_idSWS_FT_FI8
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000250|UniProtKB:Q3TBT3
ChainResidueDetails
ALYS338

site_idSWS_FT_FI9
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:31968013
ChainResidueDetails
ALYS236

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon