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6YCQ

Crystal structure of the DNA binding domain of Arabidopsis thaliana Auxin Response Factor 1 (AtARF1) in complex with High Affinity DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
A0009725biological_processresponse to hormone
B0003677molecular_functionDNA binding
B0005634cellular_componentnucleus
B0006355biological_processregulation of DNA-templated transcription
B0009725biological_processresponse to hormone
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue CL A 401
ChainResidue
AHIS25
ATHR33
ALEU34

site_idAC2
Number of Residues1
Detailsbinding site for residue CL A 402
ChainResidue
ATHR127

site_idAC3
Number of Residues1
Detailsbinding site for residue CL A 403
ChainResidue
AARG293

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 404
ChainResidue
AGLY138
AARG181
CHOH234

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 405
ChainResidue
AARG343
ACL406
AARG83

site_idAC6
Number of Residues3
Detailsbinding site for residue CL A 406
ChainResidue
AGLN81
ATRP335
ACL405

site_idAC7
Number of Residues4
Detailsbinding site for residue FMT A 407
ChainResidue
AARG293
AGLU353
APRO354
AHOH520

site_idAC8
Number of Residues2
Detailsbinding site for residue FMT A 408
ChainResidue
AALA26
ASER123

site_idAC9
Number of Residues3
Detailsbinding site for residue FMT A 409
ChainResidue
ACYS27
AALA28
AARG267

site_idAD1
Number of Residues9
Detailsbinding site for residue TRS A 410
ChainResidue
ALEU31
ATHR33
AARG270
AGLU272
AARG297
AGLU353
AHOH506
AHOH509
AHOH594

site_idAD2
Number of Residues2
Detailsbinding site for residue CL B 401
ChainResidue
BLYS126
BTHR127

site_idAD3
Number of Residues4
Detailsbinding site for residue CL B 402
ChainResidue
BGLY138
BARG181
DHOH102
DHOH117

site_idAD4
Number of Residues1
Detailsbinding site for residue CL B 403
ChainResidue
BSER276

site_idAD5
Number of Residues2
Detailsbinding site for residue CL B 404
ChainResidue
BGLY314
BVAL315

site_idAD6
Number of Residues1
Detailsbinding site for residue CL B 405
ChainResidue
BGLU163

site_idAD7
Number of Residues2
Detailsbinding site for residue FMT B 406
ChainResidue
BGLY38
BALA111

site_idAD8
Number of Residues5
Detailsbinding site for residue FMT B 407
ChainResidue
BTHR33
BTYR264
BGLU272
BPHE273
BILE274

site_idAD9
Number of Residues6
Detailsbinding site for residue NA B 408
ChainResidue
BSER131
BASP132
BSER134
BGLY137
BGLY138
BHOH557

site_idAE1
Number of Residues8
Detailsbinding site for residue TRS B 409
ChainResidue
BLEU31
BTHR33
BARG270
BGLU272
BARG297
BGLU353
BHOH521
BHOH527

site_idAE2
Number of Residues1
Detailsbinding site for residue CL C 101
ChainResidue
CDC5

site_idAE3
Number of Residues5
Detailsbinding site for residue TRS C 102
ChainResidue
AHOH605
CDT12
CDG13
CDG14
DDC8

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues204
DetailsDNA_BIND: TF-B3 => ECO:0000255|PROSITE-ProRule:PRU00326
ChainResidueDetails
APHE124-MET226
BPHE124-MET226

225946

PDB entries from 2024-10-09

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