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6XW7

Crystal structure of murine norovirus P domain in complex with Nanobody NB-5829 and glycochenodeoxycholate (GCDCA)

Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue EDO A 601
ChainResidue
ATYR295
AGLN340
ATHR341
AGLU342
AVAL387
AVAL391

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 602
ChainResidue
APRO422
AHOH718
CTHR69
AASN261
APRO419
AGLY421

site_idAC3
Number of Residues17
Detailsbinding site for residue CHO A 603
ChainResidue
ATRP245
AALA247
ATYR435
AMET436
AARG437
AHOH715
AHOH750
AHOH824
AHOH856
BALA290
BILE310
BGLN312
BGLY314
BARG390
BVAL391
BARG392
BHOH777

site_idAC4
Number of Residues16
Detailsbinding site for residue CHO B 601
ChainResidue
AILE310
AGLN312
AGLY314
AARG390
AVAL391
AARG392
AHOH777
BTRP245
BALA247
BTYR250
BTYR435
BARG437
BHOH721
BHOH751
BHOH755
BHOH787

site_idAC5
Number of Residues6
Detailsbinding site for residue MG B 602
ChainResidue
BGLN438
BASP440
BGLU447
BHOH710
BHOH854
BHOH863

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO E 601
ChainResidue
ETYR295
EGLN340
ETHR341
EGLU342
EVAL387
EARG390
EVAL391

site_idAC7
Number of Residues4
Detailsbinding site for residue EDO E 602
ChainResidue
EASN261
EPRO419
EGLY421
EPRO422

site_idAC8
Number of Residues14
Detailsbinding site for residue CHO E 603
ChainResidue
ETRP245
EALA247
ETYR250
ETYR435
EARG437
EHOH738
EHOH772
EHOH784
FALA290
FGLN312
FGLY314
FARG390
FVAL391
FARG392

site_idAC9
Number of Residues10
Detailsbinding site for residue CHO F 900
ChainResidue
EGLN312
EARG390
EVAL391
EARG392
EHOH730
FTRP245
FALA247
FTYR435
FARG437
FHOH1049

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO C 700
ChainResidue
ALEU275
ALEU276
CSER50
CILE51
CSER57
CASN59
CARG99

site_idAD2
Number of Residues9
Detailsbinding site for residue EDO D 700
ChainResidue
DASN59
DARG99
DHOH806
BTHR274
BLEU275
BLEU276
DSER50
DILE51
DSER57

site_idAD3
Number of Residues9
Detailsbinding site for residue EDO G 700
ChainResidue
ETHR274
ELEU275
ELEU276
GSER50
GILE51
GSER57
GASN59
GARG99
GHOH803

site_idAD4
Number of Residues7
Detailsbinding site for residue EDO H 700
ChainResidue
FTHR274
FLEU275
FLEU276
HSER50
HSER57
HASN59
HARG99

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PDB entries from 2024-10-30

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