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6XNX

Structure of RAG1 (R848M/E649V)-RAG2-DNA Strand Transfer Complex (Dynamic-Form)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0033151biological_processV(D)J recombination
A0043565molecular_functionsequence-specific DNA binding
A0046872molecular_functionmetal ion binding
A0061630molecular_functionubiquitin protein ligase activity
B0003677molecular_functionDNA binding
B0005634cellular_componentnucleus
B0006310biological_processDNA recombination
C0004519molecular_functionendonuclease activity
C0033151biological_processV(D)J recombination
C0043565molecular_functionsequence-specific DNA binding
C0046872molecular_functionmetal ion binding
C0061630molecular_functionubiquitin protein ligase activity
D0003677molecular_functionDNA binding
D0005634cellular_componentnucleus
D0006310biological_processDNA recombination
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 1101
ChainResidue
AGLY601
AMET602
yDG35
yDC36

site_idAC2
Number of Residues3
Detailsbinding site for residue MG A 1102
ChainResidue
AGLU662
AASP708
IDC16

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1103
ChainResidue
AHIS937
AHIS942
ACYS727
ACYS730

site_idAC4
Number of Residues6
Detailsbinding site for residue MG C 1101
ChainResidue
CGLY601
CGLU662
CASP708
JDC16
xDC47
xMG101

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN C 1102
ChainResidue
CCYS727
CCYS730
CHIS937
CHIS942

site_idAC6
Number of Residues4
Detailsbinding site for residue MG x 101
ChainResidue
CGLY601
CMG1101
xDG46
xDC47

Functional Information from PROSITE/UniProt
site_idPS00435
Number of Residues11
DetailsPEROXIDASE_1 Peroxidases proximal heme-ligand signature. DTVYILGGHSL
ChainResidueDetails
BASP214-LEU224

site_idPS00518
Number of Residues10
DetailsZF_RING_1 Zinc finger RING-type signature. CkHlFCriCI
ChainResidueDetails
ACYS305-ILE314

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsSite: {"description":"Essential for DNA hairpin formation, participates in base-stacking interactions near the cleavage site"}
ChainResidueDetails

244349

PDB entries from 2025-11-05

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