Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6WYO

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) H82F F202Y double mutant complexed with Trichostatin A

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
AASP230
AHIS232
AASP323
ATSN504

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 502
ChainResidue
AASP228
AASP230
AHIS232
ASER251
AVAL252

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 503
ChainResidue
APHE241
AASP244
AVAL247
ATYR280
AHOH625
AHOH630

site_idAC4
Number of Residues15
Detailsbinding site for residue TSN A 504
ChainResidue
ASER150
AHIS192
AHIS193
ATYR202
AASP230
AHIS232
ATRP261
AASP323
ALYS330
ATYR363
AZN501
BASP257
BGLY258
BSER259
BHIS263

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BASP230
BHIS232
BASP323
BTSN504

site_idAC6
Number of Residues5
Detailsbinding site for residue K B 502
ChainResidue
BASP228
BASP230
BHIS232
BSER251
BVAL252

site_idAC7
Number of Residues6
Detailsbinding site for residue K B 503
ChainResidue
BPHE241
BASP244
BVAL247
BTYR280
BHOH617
BHOH641

site_idAC8
Number of Residues17
Detailsbinding site for residue TSN B 504
ChainResidue
AASP257
AGLY258
ASER259
AHIS263
BTRP78
BSER150
BHIS192
BHIS193
BGLY201
BTYR202
BASP230
BHIS232
BTRP261
BASP323
BLYS330
BTYR363
BZN501

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon