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6WRQ

Crystal structure of Mj 3-nitro-tyrosine tRNA synthetase (5B) S158C variant bound to 3-nitro-tyrosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004831molecular_functiontyrosine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006437biological_processtyrosyl-tRNA aminoacylation
A0016874molecular_functionligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue GOL A 401
ChainResidue
AARG223
AASN289
AGLU293

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL A 402
ChainResidue
ALEU136
AGLU172
AVAL195
ALYS204

site_idAC3
Number of Residues5
Detailsbinding site for residue NA A 403
ChainResidue
ALYS128
APRO144
AHOH693
AASP27
ALEU127

site_idAC4
Number of Residues14
Detailsbinding site for residue NIY A 404
ChainResidue
AGLY34
AGLU36
ALEU65
AALA67
ACYS70
AGLN109
ATYR151
AGLN155
ACYS158
AGLN173
AHOH527
AHOH537
AHOH612
AHOH617

site_idAC5
Number of Residues9
Detailsbinding site for residue NIY A 405
ChainResidue
ALYS76
ALEU136
AILE137
AALA138
AGLU140
ASER206
ASER208
ALYS209
AHOH640

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues10
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. P..SGkIHLGHY
ChainResidueDetails
APRO37-TYR46

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsRegion: {"description":"Tyrosine"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsRegion: {"description":"Interaction with t-RNA"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsMotif: {"description":"'HIGH' region"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsMotif: {"description":"'KMSKS' region"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"12754495","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsSite: {"description":"Interaction with t-RNA"}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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