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6WOA

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 2-Diphosphoinositol pentakisphosphate (2-IP7), Mg, and Fluoride ion

Functional Information from GO Data
ChainGOidnamespacecontents
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue UEV A 401
ChainResidue
AARG10
AGLU66
AGLU70
AARG89
AHIS91
AARG115
ALYS133
AMG402
AMG403
AMG404
AF407
ALYS18
AHOH502
AHOH503
AHOH545
AHOH548
AHOH569
AARG20
ASER39
ASER40
AILE47
AGLY50
AGLY51
AGLY52

site_idAC2
Number of Residues4
Detailsbinding site for residue MG A 402
ChainResidue
AGLY50
AGLU70
AUEV401
AHOH595

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 403
ChainResidue
AGLU66
AGLU70
AUEV401
AMG404
AF407
AHOH548
AHOH554

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 404
ChainResidue
AGLU66
AUEV401
AMG403
AF407
AHOH542
AHOH558
AHOH611

site_idAC5
Number of Residues6
Detailsbinding site for residue CL A 405
ChainResidue
ASER28
ASER30
AGLU31
AGLU32
AGLU33
AHOH622

site_idAC6
Number of Residues9
Detailsbinding site for residue SO4 A 406
ChainResidue
AARG20
AASN86
AHIS91
AVAL135
AGLN136
ATYR139
AHOH521
AHOH529
AHOH534

site_idAC7
Number of Residues9
Detailsbinding site for residue F A 407
ChainResidue
AGLU66
AUEV401
AMG403
AMG404
AHOH548
AHOH554
AHOH558
AHOH611
AHOH633

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GgmepeEepsvAAvREVcEEaG
ChainResidueDetails
AGLY51-GLY72

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305
ChainResidueDetails
AGLU69

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2FVV, ECO:0007744|PDB:2Q9P
ChainResidueDetails
AARG10
ALYS18
ASER39
AARG89
ALYS133

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2Q9P
ChainResidueDetails
AGLY50
AGLU66
AGLU70
AARG115

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
AMET1

224004

PDB entries from 2024-08-21

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