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6WO8

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5-PP-IP4), Mg, and Fluoride ion

Functional Information from GO Data
ChainGOidnamespacecontents
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues32
Detailsbinding site for residue U6J A 401
ChainResidue
AARG10
AGLY52
AGLU66
AGLU70
AARG89
AHIS91
AARG115
ALYS133
AMG402
AMG403
AMG404
ALYS18
AF407
AHOH505
AHOH506
AHOH511
AHOH530
AHOH532
AHOH535
AHOH544
AHOH568
AHOH578
AARG20
AHOH581
AHOH587
AHOH611
ASER39
ASER40
AARG41
AILE47
AGLY50
AGLY51

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AGLY50
AGLY51
AGLU70
AU6J401
AMG403
AHOH506

site_idAC3
Number of Residues8
Detailsbinding site for residue MG A 403
ChainResidue
AGLU66
AGLU70
AU6J401
AMG402
AMG404
AF407
AHOH563
AHOH578

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 404
ChainResidue
AGLU66
AU6J401
AMG403
AF407
AHOH530
AHOH554
AHOH611

site_idAC5
Number of Residues6
Detailsbinding site for residue CL A 405
ChainResidue
ASER28
ASER30
AGLU31
AGLU32
AGLU33
AHOH615

site_idAC6
Number of Residues8
Detailsbinding site for residue SO4 A 406
ChainResidue
AARG20
AASN86
AHIS91
AVAL135
AGLN136
ATYR139
AHOH528
AHOH582

site_idAC7
Number of Residues10
Detailsbinding site for residue F A 407
ChainResidue
AGLU66
AU6J401
AMG403
AMG404
AHOH505
AHOH554
AHOH563
AHOH578
AHOH611
AHOH644

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GgmepeEepsvAAvREVcEEaG
ChainResidueDetails
AGLY51-GLY72

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305
ChainResidueDetails
AGLU69

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2FVV, ECO:0007744|PDB:2Q9P
ChainResidueDetails
AARG10
ALYS18
ASER39
AARG89
ALYS133

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2Q9P
ChainResidueDetails
AGLY50
AGLU66
AGLU70
AARG115

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
AMET1

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PDB entries from 2024-07-10

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