Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6WNK

Macrocyclic peptides TDI5575 that selectively inhibit the Mycobacterium tuberculosis proteasome

Functional Information from GO Data
ChainGOidnamespacecontents
a0004298molecular_functionthreonine-type endopeptidase activity
a0005839cellular_componentproteasome core complex
a0010498biological_processproteasomal protein catabolic process
a0051603biological_processproteolysis involved in protein catabolic process
A0000502cellular_componentproteasome complex
A0004175molecular_functionendopeptidase activity
A0004298molecular_functionthreonine-type endopeptidase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005839cellular_componentproteasome core complex
A0005886cellular_componentplasma membrane
A0009274cellular_componentpeptidoglycan-based cell wall
A0010498biological_processproteasomal protein catabolic process
A0016787molecular_functionhydrolase activity
A0019773cellular_componentproteasome core complex, alpha-subunit complex
A0019941biological_processmodification-dependent protein catabolic process
A0030682biological_processsymbiont-mediated perturbation of host defenses
A0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
A0051603biological_processproteolysis involved in protein catabolic process
b0004298molecular_functionthreonine-type endopeptidase activity
b0005839cellular_componentproteasome core complex
b0010498biological_processproteasomal protein catabolic process
b0051603biological_processproteolysis involved in protein catabolic process
B0000502cellular_componentproteasome complex
B0004175molecular_functionendopeptidase activity
B0004298molecular_functionthreonine-type endopeptidase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005839cellular_componentproteasome core complex
B0005886cellular_componentplasma membrane
B0009274cellular_componentpeptidoglycan-based cell wall
B0010498biological_processproteasomal protein catabolic process
B0016787molecular_functionhydrolase activity
B0019773cellular_componentproteasome core complex, alpha-subunit complex
B0019941biological_processmodification-dependent protein catabolic process
B0030682biological_processsymbiont-mediated perturbation of host defenses
B0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
B0051603biological_processproteolysis involved in protein catabolic process
C0000502cellular_componentproteasome complex
C0004175molecular_functionendopeptidase activity
C0004298molecular_functionthreonine-type endopeptidase activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0005839cellular_componentproteasome core complex
C0005886cellular_componentplasma membrane
C0009274cellular_componentpeptidoglycan-based cell wall
C0010498biological_processproteasomal protein catabolic process
C0016787molecular_functionhydrolase activity
C0019773cellular_componentproteasome core complex, alpha-subunit complex
C0019941biological_processmodification-dependent protein catabolic process
C0030682biological_processsymbiont-mediated perturbation of host defenses
C0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
C0051603biological_processproteolysis involved in protein catabolic process
D0000502cellular_componentproteasome complex
D0004175molecular_functionendopeptidase activity
D0004298molecular_functionthreonine-type endopeptidase activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005839cellular_componentproteasome core complex
D0005886cellular_componentplasma membrane
D0009274cellular_componentpeptidoglycan-based cell wall
D0010498biological_processproteasomal protein catabolic process
D0016787molecular_functionhydrolase activity
D0019773cellular_componentproteasome core complex, alpha-subunit complex
D0019941biological_processmodification-dependent protein catabolic process
D0030682biological_processsymbiont-mediated perturbation of host defenses
D0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
D0051603biological_processproteolysis involved in protein catabolic process
E0000502cellular_componentproteasome complex
E0004175molecular_functionendopeptidase activity
E0004298molecular_functionthreonine-type endopeptidase activity
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0005839cellular_componentproteasome core complex
E0005886cellular_componentplasma membrane
E0009274cellular_componentpeptidoglycan-based cell wall
E0010498biological_processproteasomal protein catabolic process
E0016787molecular_functionhydrolase activity
E0019773cellular_componentproteasome core complex, alpha-subunit complex
E0019941biological_processmodification-dependent protein catabolic process
E0030682biological_processsymbiont-mediated perturbation of host defenses
E0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
E0051603biological_processproteolysis involved in protein catabolic process
F0000502cellular_componentproteasome complex
F0004175molecular_functionendopeptidase activity
F0004298molecular_functionthreonine-type endopeptidase activity
F0005515molecular_functionprotein binding
F0005737cellular_componentcytoplasm
F0005839cellular_componentproteasome core complex
F0005886cellular_componentplasma membrane
F0009274cellular_componentpeptidoglycan-based cell wall
F0010498biological_processproteasomal protein catabolic process
F0016787molecular_functionhydrolase activity
F0019773cellular_componentproteasome core complex, alpha-subunit complex
F0019941biological_processmodification-dependent protein catabolic process
F0030682biological_processsymbiont-mediated perturbation of host defenses
F0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
F0051603biological_processproteolysis involved in protein catabolic process
G0000502cellular_componentproteasome complex
G0004175molecular_functionendopeptidase activity
G0004298molecular_functionthreonine-type endopeptidase activity
G0005515molecular_functionprotein binding
G0005737cellular_componentcytoplasm
G0005839cellular_componentproteasome core complex
G0005886cellular_componentplasma membrane
G0009274cellular_componentpeptidoglycan-based cell wall
G0010498biological_processproteasomal protein catabolic process
G0016787molecular_functionhydrolase activity
G0019773cellular_componentproteasome core complex, alpha-subunit complex
G0019941biological_processmodification-dependent protein catabolic process
G0030682biological_processsymbiont-mediated perturbation of host defenses
G0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
G0051603biological_processproteolysis involved in protein catabolic process
H0004298molecular_functionthreonine-type endopeptidase activity
H0005839cellular_componentproteasome core complex
H0010498biological_processproteasomal protein catabolic process
H0051603biological_processproteolysis involved in protein catabolic process
I0004298molecular_functionthreonine-type endopeptidase activity
I0005839cellular_componentproteasome core complex
I0010498biological_processproteasomal protein catabolic process
I0051603biological_processproteolysis involved in protein catabolic process
J0004298molecular_functionthreonine-type endopeptidase activity
J0005839cellular_componentproteasome core complex
J0010498biological_processproteasomal protein catabolic process
J0051603biological_processproteolysis involved in protein catabolic process
K0004298molecular_functionthreonine-type endopeptidase activity
K0005839cellular_componentproteasome core complex
K0010498biological_processproteasomal protein catabolic process
K0051603biological_processproteolysis involved in protein catabolic process
L0004298molecular_functionthreonine-type endopeptidase activity
L0005839cellular_componentproteasome core complex
L0010498biological_processproteasomal protein catabolic process
L0051603biological_processproteolysis involved in protein catabolic process
M0004298molecular_functionthreonine-type endopeptidase activity
M0005839cellular_componentproteasome core complex
M0010498biological_processproteasomal protein catabolic process
M0051603biological_processproteolysis involved in protein catabolic process
N0004298molecular_functionthreonine-type endopeptidase activity
N0005839cellular_componentproteasome core complex
N0010498biological_processproteasomal protein catabolic process
N0051603biological_processproteolysis involved in protein catabolic process
O0000502cellular_componentproteasome complex
O0004175molecular_functionendopeptidase activity
O0004298molecular_functionthreonine-type endopeptidase activity
O0005515molecular_functionprotein binding
O0005737cellular_componentcytoplasm
O0005839cellular_componentproteasome core complex
O0005886cellular_componentplasma membrane
O0009274cellular_componentpeptidoglycan-based cell wall
O0010498biological_processproteasomal protein catabolic process
O0016787molecular_functionhydrolase activity
O0019773cellular_componentproteasome core complex, alpha-subunit complex
O0019941biological_processmodification-dependent protein catabolic process
O0030682biological_processsymbiont-mediated perturbation of host defenses
O0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
O0051603biological_processproteolysis involved in protein catabolic process
P0000502cellular_componentproteasome complex
P0004175molecular_functionendopeptidase activity
P0004298molecular_functionthreonine-type endopeptidase activity
P0005515molecular_functionprotein binding
P0005737cellular_componentcytoplasm
P0005839cellular_componentproteasome core complex
P0005886cellular_componentplasma membrane
P0009274cellular_componentpeptidoglycan-based cell wall
P0010498biological_processproteasomal protein catabolic process
P0016787molecular_functionhydrolase activity
P0019773cellular_componentproteasome core complex, alpha-subunit complex
P0019941biological_processmodification-dependent protein catabolic process
P0030682biological_processsymbiont-mediated perturbation of host defenses
P0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
P0051603biological_processproteolysis involved in protein catabolic process
Q0000502cellular_componentproteasome complex
Q0004175molecular_functionendopeptidase activity
Q0004298molecular_functionthreonine-type endopeptidase activity
Q0005515molecular_functionprotein binding
Q0005737cellular_componentcytoplasm
Q0005839cellular_componentproteasome core complex
Q0005886cellular_componentplasma membrane
Q0009274cellular_componentpeptidoglycan-based cell wall
Q0010498biological_processproteasomal protein catabolic process
Q0016787molecular_functionhydrolase activity
Q0019773cellular_componentproteasome core complex, alpha-subunit complex
Q0019941biological_processmodification-dependent protein catabolic process
Q0030682biological_processsymbiont-mediated perturbation of host defenses
Q0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
Q0051603biological_processproteolysis involved in protein catabolic process
R0000502cellular_componentproteasome complex
R0004175molecular_functionendopeptidase activity
R0004298molecular_functionthreonine-type endopeptidase activity
R0005515molecular_functionprotein binding
R0005737cellular_componentcytoplasm
R0005839cellular_componentproteasome core complex
R0005886cellular_componentplasma membrane
R0009274cellular_componentpeptidoglycan-based cell wall
R0010498biological_processproteasomal protein catabolic process
R0016787molecular_functionhydrolase activity
R0019773cellular_componentproteasome core complex, alpha-subunit complex
R0019941biological_processmodification-dependent protein catabolic process
R0030682biological_processsymbiont-mediated perturbation of host defenses
R0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
R0051603biological_processproteolysis involved in protein catabolic process
S0000502cellular_componentproteasome complex
S0004175molecular_functionendopeptidase activity
S0004298molecular_functionthreonine-type endopeptidase activity
S0005515molecular_functionprotein binding
S0005737cellular_componentcytoplasm
S0005839cellular_componentproteasome core complex
S0005886cellular_componentplasma membrane
S0009274cellular_componentpeptidoglycan-based cell wall
S0010498biological_processproteasomal protein catabolic process
S0016787molecular_functionhydrolase activity
S0019773cellular_componentproteasome core complex, alpha-subunit complex
S0019941biological_processmodification-dependent protein catabolic process
S0030682biological_processsymbiont-mediated perturbation of host defenses
S0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
S0051603biological_processproteolysis involved in protein catabolic process
T0000502cellular_componentproteasome complex
T0004175molecular_functionendopeptidase activity
T0004298molecular_functionthreonine-type endopeptidase activity
T0005515molecular_functionprotein binding
T0005737cellular_componentcytoplasm
T0005839cellular_componentproteasome core complex
T0005886cellular_componentplasma membrane
T0009274cellular_componentpeptidoglycan-based cell wall
T0010498biological_processproteasomal protein catabolic process
T0016787molecular_functionhydrolase activity
T0019773cellular_componentproteasome core complex, alpha-subunit complex
T0019941biological_processmodification-dependent protein catabolic process
T0030682biological_processsymbiont-mediated perturbation of host defenses
T0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
T0051603biological_processproteolysis involved in protein catabolic process
U0000502cellular_componentproteasome complex
U0004175molecular_functionendopeptidase activity
U0004298molecular_functionthreonine-type endopeptidase activity
U0005515molecular_functionprotein binding
U0005737cellular_componentcytoplasm
U0005839cellular_componentproteasome core complex
U0005886cellular_componentplasma membrane
U0009274cellular_componentpeptidoglycan-based cell wall
U0010498biological_processproteasomal protein catabolic process
U0016787molecular_functionhydrolase activity
U0019773cellular_componentproteasome core complex, alpha-subunit complex
U0019941biological_processmodification-dependent protein catabolic process
U0030682biological_processsymbiont-mediated perturbation of host defenses
U0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
U0051603biological_processproteolysis involved in protein catabolic process
V0004298molecular_functionthreonine-type endopeptidase activity
V0005839cellular_componentproteasome core complex
V0010498biological_processproteasomal protein catabolic process
V0051603biological_processproteolysis involved in protein catabolic process
W0004298molecular_functionthreonine-type endopeptidase activity
W0005839cellular_componentproteasome core complex
W0010498biological_processproteasomal protein catabolic process
W0051603biological_processproteolysis involved in protein catabolic process
X0004298molecular_functionthreonine-type endopeptidase activity
X0005839cellular_componentproteasome core complex
X0010498biological_processproteasomal protein catabolic process
X0051603biological_processproteolysis involved in protein catabolic process
Y0004298molecular_functionthreonine-type endopeptidase activity
Y0005839cellular_componentproteasome core complex
Y0010498biological_processproteasomal protein catabolic process
Y0051603biological_processproteolysis involved in protein catabolic process
Z0004298molecular_functionthreonine-type endopeptidase activity
Z0005839cellular_componentproteasome core complex
Z0010498biological_processproteasomal protein catabolic process
Z0051603biological_processproteolysis involved in protein catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue U5Y H 301
ChainResidue
HTHR1
HALA49
HALA52
HCIT302
HHOH431
HHOH450
ISER122
IASP124
IGLY128
ITRP129
IHOH440
HSER20
HTHR21
HGLN22
HSER27
HVAL31
HILE45
HGLY47
HTHR48

site_idAC2
Number of Residues6
Detailsbinding site for residue CIT H 302
ChainResidue
HTHR1
HALA46
HGLY47
HGLY140
HSER141
HU5Y301

site_idAC3
Number of Residues17
Detailsbinding site for residue U5Y I 301
ChainResidue
ITHR1
ISER20
ITHR21
IGLN22
ISER27
IVAL31
IILE45
IGLY47
ITHR48
IALA49
IALA52
ICIT302
IHOH435
JASP124
JGLY128
JTRP129
JASN130

site_idAC4
Number of Residues6
Detailsbinding site for residue CIT I 302
ChainResidue
ITHR1
IGLY47
ISER141
IALA180
IU5Y301
IHOH478

site_idAC5
Number of Residues17
Detailsbinding site for residue U5Y J 301
ChainResidue
JTHR1
JSER20
JTHR21
JGLN22
JSER27
JVAL31
JILE45
JGLY47
JTHR48
JALA49
JALA52
JCIT302
KASP124
KGLY128
KTRP129
KASN130
KHOH419

site_idAC6
Number of Residues6
Detailsbinding site for residue CIT J 302
ChainResidue
JTHR1
JALA46
JGLY47
JGLY140
JSER141
JU5Y301

site_idAC7
Number of Residues19
Detailsbinding site for residue U5Y K 301
ChainResidue
KTHR1
KSER20
KTHR21
KGLN22
KSER27
KVAL31
KILE45
KGLY47
KTHR48
KALA49
KALA52
KCIT302
KHOH431
LSER122
LPHE123
LASP124
LGLY128
LTRP129
LHOH406

site_idAC8
Number of Residues5
Detailsbinding site for residue CIT K 302
ChainResidue
KTHR1
KGLY47
KGLY140
KSER141
KU5Y301

site_idAC9
Number of Residues17
Detailsbinding site for residue U5Y L 301
ChainResidue
LSER27
LVAL31
LLYS33
LILE45
LGLY47
LTHR48
LALA49
LALA52
LCIT302
MSER122
MASP124
MTRP129
MASN130
LTHR1
LSER20
LTHR21
LGLN22

site_idAD1
Number of Residues6
Detailsbinding site for residue CIT L 302
ChainResidue
LTHR1
LALA46
LGLY47
LSER141
LU5Y301
bASN24

site_idAD2
Number of Residues17
Detailsbinding site for residue U5Y M 301
ChainResidue
MTHR1
MSER20
MTHR21
MGLN22
MSER27
MVAL31
MILE45
MGLY47
MTHR48
MALA49
MALA52
MCIT302
NSER122
NASP124
NTRP129
NASN130
NHOH422

site_idAD3
Number of Residues7
Detailsbinding site for residue CIT M 302
ChainResidue
MTHR1
MALA46
MGLY47
MSER141
MALA180
MU5Y301
aASN24

site_idAD4
Number of Residues19
Detailsbinding site for residue U5Y N 301
ChainResidue
HSER122
HASP124
HGLY128
HTRP129
HASN130
HHOH425
NTHR1
NSER20
NTHR21
NGLN22
NSER27
NVAL31
NILE45
NGLY47
NTHR48
NALA49
NALA52
NCIT302
NHOH435

site_idAD5
Number of Residues7
Detailsbinding site for residue CIT N 302
ChainResidue
NTHR1
NALA46
NGLY47
NLEU101
NSER141
NU5Y301
ZASN24

site_idAD6
Number of Residues2
Detailsbinding site for residue DMF O 301
ChainResidue
OGLY77
OTHR106

site_idAD7
Number of Residues4
Detailsbinding site for residue DMF P 301
ChainResidue
PGLY77
PVAL102
PTYR103
PTHR106

site_idAD8
Number of Residues4
Detailsbinding site for residue DMF Q 301
ChainResidue
QGLY77
QGLY78
QTYR103
QTHR106

site_idAD9
Number of Residues6
Detailsbinding site for residue DMF R 301
ChainResidue
RTYR35
RALA36
RGLY38
RALA128
RLYS134
RALA215

site_idAE1
Number of Residues8
Detailsbinding site for residue DMF R 302
ChainResidue
QARG97
QASN101
RLEU50
RGLN51
RPHE68
RARG75
RARG76
YLEU69

site_idAE2
Number of Residues2
Detailsbinding site for residue DMF S 301
ChainResidue
SGLY77
STHR106

site_idAE3
Number of Residues18
Detailsbinding site for residue U5Y V 301
ChainResidue
VTHR1
VARG19
VSER20
VTHR21
VGLN22
VSER27
VVAL31
VILE45
VGLY47
VTHR48
VALA49
VALA52
VCIT302
WSER122
WASP124
WTRP129
WASN130
WHOH424

site_idAE4
Number of Residues8
Detailsbinding site for residue CIT V 302
ChainResidue
KASN24
VTHR1
VTHR21
VALA46
VGLY47
VSER141
VALA180
VU5Y301

site_idAE5
Number of Residues4
Detailsbinding site for residue DMF W 301
ChainResidue
OASP90
VARG57
WALA77
WTRP129

site_idAE6
Number of Residues20
Detailsbinding site for residue U5Y W 302
ChainResidue
WTHR1
WSER20
WTHR21
WGLN22
WSER27
WVAL31
WILE45
WGLY47
WTHR48
WALA49
WALA52
WCIT303
WHOH442
WHOH458
XSER122
XASP124
XGLY128
XTRP129
XASN130
XHOH434

site_idAE7
Number of Residues6
Detailsbinding site for residue CIT W 303
ChainResidue
WTHR1
WALA46
WGLY47
WGLY140
WSER141
WU5Y302

site_idAE8
Number of Residues3
Detailsbinding site for residue DMF X 301
ChainResidue
XTHR21
XGLY23
XU5Y302

site_idAE9
Number of Residues23
Detailsbinding site for residue U5Y X 302
ChainResidue
XTHR1
XSER20
XTHR21
XGLN22
XSER27
XVAL31
XLYS33
XILE45
XGLY47
XTHR48
XALA49
XALA52
XDMF301
XCIT303
XHOH407
XHOH478
XHOH482
YSER122
YASP124
YGLY128
YTRP129
YASN130
YHOH416

site_idAF1
Number of Residues7
Detailsbinding site for residue CIT X 303
ChainResidue
XTHR1
XALA46
XGLY47
XGLY140
XSER141
XU5Y302
XHOH482

site_idAF2
Number of Residues17
Detailsbinding site for residue U5Y Y 301
ChainResidue
YTHR1
YSER20
YTHR21
YGLN22
YSER27
YVAL31
YILE45
YGLY47
YTHR48
YALA49
YALA52
YCIT302
YHOH456
ZSER122
ZASP124
ZTRP129
ZHOH1223

site_idAF3
Number of Residues5
Detailsbinding site for residue CIT Y 302
ChainResidue
HASN24
YTHR1
YGLY47
YSER141
YU5Y301

site_idAF4
Number of Residues18
Detailsbinding site for residue U5Y Z 301
ChainResidue
ZTHR1
ZSER20
ZTHR21
ZGLN22
ZSER27
ZVAL31
ZILE45
ZGLY47
ZTHR48
ZALA49
ZALA52
ZCIT302
ZHOH1227
aSER122
aASP124
aGLY128
aTRP129
aASN130

site_idAF5
Number of Residues6
Detailsbinding site for residue CIT Z 302
ChainResidue
ZTHR1
ZALA46
ZGLY47
ZGLY140
ZSER141
ZU5Y301

site_idAF6
Number of Residues17
Detailsbinding site for residue U5Y a 301
ChainResidue
aTHR1
aSER20
aTHR21
aGLN22
aSER27
aVAL31
aLYS33
aILE45
aGLY47
aTHR48
aALA49
aCIT302
aHOH413
aHOH415
bASP124
bGLY128
bTRP129

site_idAF7
Number of Residues6
Detailsbinding site for residue CIT a 302
ChainResidue
aTHR1
aALA46
aGLY47
aGLY140
aSER141
aU5Y301

site_idAF8
Number of Residues18
Detailsbinding site for residue U5Y b 301
ChainResidue
VSER122
VASP124
VGLY128
VTRP129
VHOH407
bTHR1
bSER20
bTHR21
bGLN22
bSER27
bVAL31
bILE45
bGLY47
bTHR48
bALA49
bALA52
bCIT302
bHOH439

site_idAF9
Number of Residues6
Detailsbinding site for residue CIT b 302
ChainResidue
LASN24
bTHR1
bGLY47
bGLY140
bSER141
bU5Y301

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsACT_SITE: Nucleophile => ECO:0000305|PubMed:20711362
ChainResidueDetails
HTHR1
XTHR1
YTHR1
ZTHR1
aTHR1
bTHR1
ETHR202
FTHR84
FTHR178
FTHR202
GTHR84
ITHR1
GTHR178
GTHR202
OTHR84
OTHR178
OTHR202
PTHR84
PTHR178
PTHR202
QTHR84
QTHR178
JTHR1
QTHR202
RTHR84
RTHR178
RTHR202
STHR84
STHR178
STHR202
TTHR84
TTHR178
TTHR202
KTHR1
UTHR84
UTHR178
UTHR202
LTHR1
MTHR1
NTHR1
VTHR1
WTHR1

site_idSWS_FT_FI2
Number of Residues14
DetailsSITE: Covalent link with the inhibitor MLN-273 => ECO:0000269|PubMed:16468986
ChainResidueDetails
HTHR1
XTHR1
YTHR1
ZTHR1
aTHR1
bTHR1
ITHR1
JTHR1
KTHR1
LTHR1
MTHR1
NTHR1
VTHR1
WTHR1

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon