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6WK0

Crystal structure of human ribokinase in complex with AMPPCP and ribose

Functional Information from GO Data
ChainGOidnamespacecontents
A0004747molecular_functionribokinase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006014biological_processD-ribose metabolic process
A0006098biological_processpentose-phosphate shunt
A0006753biological_processnucleoside phosphate metabolic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0019303biological_processD-ribose catabolic process
A0042802molecular_functionidentical protein binding
A0046835biological_processcarbohydrate phosphorylation
A0046872molecular_functionmetal ion binding
B0004747molecular_functionribokinase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006014biological_processD-ribose metabolic process
B0006098biological_processpentose-phosphate shunt
B0006753biological_processnucleoside phosphate metabolic process
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0019303biological_processD-ribose catabolic process
B0042802molecular_functionidentical protein binding
B0046835biological_processcarbohydrate phosphorylation
B0046872molecular_functionmetal ion binding
C0004747molecular_functionribokinase activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006014biological_processD-ribose metabolic process
C0006098biological_processpentose-phosphate shunt
C0006753biological_processnucleoside phosphate metabolic process
C0016301molecular_functionkinase activity
C0016310biological_processphosphorylation
C0019303biological_processD-ribose catabolic process
C0042802molecular_functionidentical protein binding
C0046835biological_processcarbohydrate phosphorylation
C0046872molecular_functionmetal ion binding
D0004747molecular_functionribokinase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006014biological_processD-ribose metabolic process
D0006098biological_processpentose-phosphate shunt
D0006753biological_processnucleoside phosphate metabolic process
D0016301molecular_functionkinase activity
D0016310biological_processphosphorylation
D0019303biological_processD-ribose catabolic process
D0042802molecular_functionidentical protein binding
D0046835biological_processcarbohydrate phosphorylation
D0046872molecular_functionmetal ion binding
Functional Information from PROSITE/UniProt
site_idPS00584
Number of Residues14
DetailsPFKB_KINASES_2 pfkB family of carbohydrate kinases signature 2. DTtGAGDsfvGALA
ChainResidueDetails
AASP263-ALA276

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P0A9J6, ECO:0000255|HAMAP-Rule:MF_03215
ChainResidueDetails
AASP269
BASP269
CASP269
DASP269

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P0A9J6, ECO:0000255|HAMAP-Rule:MF_03215
ChainResidueDetails
AMET25
BTHR265
BASP269
BGLY306
CMET25
CGLY53
CGLU154
CTHR265
CASP269
CGLY306
DMET25
AGLY53
DGLY53
DGLU154
DTHR265
DASP269
DGLY306
AGLU154
ATHR265
AASP269
AGLY306
BMET25
BGLY53
BGLU154

site_idSWS_FT_FI3
Number of Residues20
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03215, ECO:0000269|Ref.7
ChainResidueDetails
AASN199
BASN295
CASN199
CTHR235
CTHR256
CGLY268
CASN295
DASN199
DTHR235
DTHR256
DGLY268
ATHR235
DASN295
ATHR256
AGLY268
AASN295
BASN199
BTHR235
BTHR256
BGLY268

site_idSWS_FT_FI4
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03215, ECO:0000305|Ref.7
ChainResidueDetails
AASP263
CSER301
CALA304
CSER310
DASP263
DSER301
DALA304
DSER310
ASER301
AALA304
ASER310
BASP263
BSER301
BALA304
BSER310
CASP263

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PDB entries from 2024-09-25

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