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6WID

Nucleotide incorporation intermediate into quaternary complex of human Polymerase Mu on a complementary DNA double-strand break substrate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues29
Detailsbinding site for residue DUP A 701
ChainResidue
AGLY319
ATRP434
AGLY436
APPV702
AMG703
AMG704
AHOH801
AHOH804
AHOH809
AHOH810
AHOH830
AGLY320
AHOH922
AHOH930
AHOH936
AHOH941
AHOH989
PDA4
PDT5
PHOH102
PHOH111
TDA5
AARG323
ALYS325
AGLY328
AHIS329
AASP330
AASP332
AGLY433

site_idAC2
Number of Residues19
Detailsbinding site for residue PPV A 702
ChainResidue
AGLY319
AGLY320
AARG323
ALYS325
AGLY328
AHIS329
AASP330
AASP332
ADUP701
AMG704
AHOH804
AHOH809
AHOH810
AHOH830
AHOH922
AHOH930
AHOH936
AHOH941
PDT5

site_idAC3
Number of Residues8
Detailsbinding site for residue MG A 703
ChainResidue
AASP330
AASP332
AASP418
ADUP701
AMG704
PDA4
PDT5
PHOH102

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 704
ChainResidue
AASP330
AASP332
ADUP701
APPV702
AMG703
AHOH922
PDT5

site_idAC5
Number of Residues6
Detailsbinding site for residue NA A 705
ChainResidue
ATHR241
AILE243
AVAL246
AHOH1015
PDT3
PHOH119

site_idAC6
Number of Residues1
Detailsbinding site for residue CL A 706
ChainResidue
ALEU326

site_idAC7
Number of Residues3
Detailsbinding site for residue 1PE A 707
ChainResidue
AARG253
AARG256
AGLU451

site_idAC8
Number of Residues4
Detailsbinding site for residue GOL A 708
ChainResidue
APRO148
ALYS187
ALEU189
AHOH935

site_idAC9
Number of Residues10
Detailsbinding site for residue GOL A 709
ChainResidue
APHE169
AGLU170
AGLY171
AARG233
AVAL248
ALYS249
AASP252
AHOH856
AHOH863
AHOH993

site_idAD1
Number of Residues4
Detailsbinding site for residue PEG A 710
ChainResidue
AGLN426
AHIS459
AHOH899
AHOH1035

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGklqGhDVDFLIthP
ChainResidueDetails
AGLY319-PRO338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP330
AASP332
AASP418

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Responsible for the low discrimination between dNTP and rNTP
ChainResidueDetails
AGLY433

237992

PDB entries from 2025-06-25

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