6WGM
Crystal structure of a marine metagenome TRAP solute binding protein specific for pyroglutamate (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, scf7180008839099) in complex with co-purified pyroglutamate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0055085 | biological_process | transmembrane transport |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue PCA A 401 |
| Chain | Residue |
| A | PHE87 |
| A | TRP141 |
| A | GLN144 |
| A | ARG164 |
| A | TYR166 |
| A | SER203 |
| A | SER204 |
| A | THR207 |
| A | HOH551 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 402 |
| Chain | Residue |
| A | THR34 |
| A | HOH504 |
| A | HOH517 |
| A | HOH519 |
| A | HOH568 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 403 |
| Chain | Residue |
| A | PHE105 |
| A | LEU106 |
| A | ALA107 |
| A | THR108 |
| A | ASP112 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 404 |
| Chain | Residue |
| A | GLY99 |
| A | ASN102 |
| A | PRO104 |
| A | MET301 |
| A | TRP305 |
| A | HOH629 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 405 |
| Chain | Residue |
| A | TRP117 |
| A | TYR137 |
| A | THR138 |
| A | HOH557 |
| A | HOH558 |
| A | HOH655 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 406 |
| Chain | Residue |
| A | GLU39 |
| A | LYS264 |
| A | HOH504 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 407 |
| Chain | Residue |
| A | GLU256 |
| A | LYS321 |
| A | FMT416 |
| A | HOH522 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | binding site for residue FMT A 409 |
| Chain | Residue |
| A | SER89 |
| A | ALA90 |
| A | HIS91 |
| A | ALA92 |
| A | ASN93 |
| A | ASN167 |
| A | SER168 |
| A | HOH501 |
| A | HOH545 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue FMT A 410 |
| Chain | Residue |
| A | ILE58 |
| A | THR59 |
| A | THR60 |
| A | HOH657 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue FMT A 411 |
| Chain | Residue |
| A | GLY63 |
| A | GLY64 |
| A | LYS68 |
| A | GLU188 |
| A | HOH587 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue FMT A 412 |
| Chain | Residue |
| A | TYR31 |
| A | ALA32 |
| A | ALA186 |
| A | ARG211 |
| A | HOH523 |
| A | HOH599 |
| site_id | AD3 |
| Number of Residues | 3 |
| Details | binding site for residue FMT A 413 |
| Chain | Residue |
| A | TYR320 |
| A | MET323 |
| A | HOH509 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue FMT A 414 |
| Chain | Residue |
| A | GLY70 |
| A | GLU71 |
| A | HOH581 |
| A | HOH603 |
| site_id | AD5 |
| Number of Residues | 9 |
| Details | binding site for residue FMT A 415 |
| Chain | Residue |
| A | PHE20 |
| A | THR52 |
| A | GLY53 |
| A | LYS55 |
| A | SER154 |
| A | ALA156 |
| A | HOH536 |
| A | HOH554 |
| A | HOH580 |
| site_id | AD6 |
| Number of Residues | 7 |
| Details | binding site for residue FMT A 416 |
| Chain | Residue |
| A | LYS47 |
| A | LEU306 |
| A | GLN314 |
| A | VAL317 |
| A | EDO407 |
| A | HOH542 |
| A | HOH647 |
| site_id | AD7 |
| Number of Residues | 3 |
| Details | binding site for residue FMT A 417 |
| Chain | Residue |
| A | LYS222 |
| A | PHE273 |
| A | GLU277 |
| site_id | AD8 |
| Number of Residues | 4 |
| Details | binding site for residue FMT A 418 |
| Chain | Residue |
| A | TRP214 |
| A | GLU215 |
| A | HIS216 |
| A | LEU217 |
