6WFO
Crystal structure of human Naa50 in complex with AcCoA and an inhibitor (compound 4b) identified using DNA encoded library technology
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004596 | molecular_function | protein-N-terminal amino-acid acetyltransferase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005634 | cellular_component | nucleus |
A | 0005730 | cellular_component | nucleolus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006338 | biological_process | chromatin remodeling |
A | 0006474 | biological_process | N-terminal protein amino acid acetylation |
A | 0007064 | biological_process | mitotic sister chromatid cohesion |
A | 0010485 | molecular_function | histone H4 acetyltransferase activity |
A | 0016740 | molecular_function | transferase activity |
A | 0016746 | molecular_function | acyltransferase activity |
A | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
A | 0031415 | cellular_component | NatA complex |
A | 0034087 | biological_process | establishment of mitotic sister chromatid cohesion |
A | 0043687 | biological_process | post-translational protein modification |
A | 0061733 | molecular_function | protein-lysine-acetyltransferase activity |
A | 0070062 | cellular_component | extracellular exosome |
A | 0071962 | biological_process | mitotic sister chromatid cohesion, centromeric |
A | 0120518 | molecular_function | protein N-terminal-methionine acetyltransferase activity |
B | 0004596 | molecular_function | protein-N-terminal amino-acid acetyltransferase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005634 | cellular_component | nucleus |
B | 0005730 | cellular_component | nucleolus |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006338 | biological_process | chromatin remodeling |
B | 0006474 | biological_process | N-terminal protein amino acid acetylation |
B | 0007064 | biological_process | mitotic sister chromatid cohesion |
B | 0010485 | molecular_function | histone H4 acetyltransferase activity |
B | 0016740 | molecular_function | transferase activity |
B | 0016746 | molecular_function | acyltransferase activity |
B | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
B | 0031415 | cellular_component | NatA complex |
B | 0034087 | biological_process | establishment of mitotic sister chromatid cohesion |
B | 0043687 | biological_process | post-translational protein modification |
B | 0061733 | molecular_function | protein-lysine-acetyltransferase activity |
B | 0070062 | cellular_component | extracellular exosome |
B | 0071962 | biological_process | mitotic sister chromatid cohesion, centromeric |
B | 0120518 | molecular_function | protein N-terminal-methionine acetyltransferase activity |
C | 0004596 | molecular_function | protein-N-terminal amino-acid acetyltransferase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005634 | cellular_component | nucleus |
C | 0005730 | cellular_component | nucleolus |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006338 | biological_process | chromatin remodeling |
C | 0006474 | biological_process | N-terminal protein amino acid acetylation |
C | 0007064 | biological_process | mitotic sister chromatid cohesion |
C | 0010485 | molecular_function | histone H4 acetyltransferase activity |
C | 0016740 | molecular_function | transferase activity |
C | 0016746 | molecular_function | acyltransferase activity |
C | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
C | 0031415 | cellular_component | NatA complex |
C | 0034087 | biological_process | establishment of mitotic sister chromatid cohesion |
C | 0043687 | biological_process | post-translational protein modification |
C | 0061733 | molecular_function | protein-lysine-acetyltransferase activity |
C | 0070062 | cellular_component | extracellular exosome |
C | 0071962 | biological_process | mitotic sister chromatid cohesion, centromeric |
C | 0120518 | molecular_function | protein N-terminal-methionine acetyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 26 |
Details | binding site for residue ACO A 201 |
Chain | Residue |
A | ILE26 |
A | ARG85 |
A | LEU86 |
A | GLY87 |
A | ILE88 |
A | GLY89 |
A | THR90 |
A | HIS112 |
A | ASN117 |
A | SER119 |
A | ALA120 |
A | PHE27 |
A | ASP122 |
A | PHE123 |
A | LYS126 |
A | U3Y202 |
A | HOH301 |
A | HOH305 |
A | HOH310 |
A | ILE74 |
A | MET75 |
A | THR76 |
A | LEU77 |
A | GLY78 |
A | CYS79 |
A | ARG84 |
site_id | AC2 |
Number of Residues | 15 |
Details | binding site for residue U3Y A 202 |
Chain | Residue |
A | PHE27 |
A | VAL29 |
A | TYR31 |
A | TYR73 |
A | MET75 |
A | HIS112 |
A | VAL113 |
A | GLN114 |
A | TYR138 |
A | TYR139 |
A | LYS140 |
A | ARG141 |
A | ACO201 |
A | HOH313 |
A | HOH320 |
site_id | AC3 |
Number of Residues | 26 |
Details | binding site for residue ACO B 201 |
Chain | Residue |
B | ILE26 |
B | PHE27 |
B | ILE74 |
B | MET75 |
B | THR76 |
B | LEU77 |
B | GLY78 |
B | CYS79 |
B | ARG84 |
B | ARG85 |
B | LEU86 |
B | GLY87 |
B | ILE88 |
B | GLY89 |
B | THR90 |
B | HIS112 |
B | ASN117 |
B | SER119 |
B | ASP122 |
B | PHE123 |
B | LYS126 |
B | U3Y202 |
B | HOH301 |
B | HOH303 |
B | HOH307 |
B | HOH332 |
site_id | AC4 |
Number of Residues | 16 |
Details | binding site for residue U3Y B 202 |
Chain | Residue |
B | PHE27 |
B | PRO28 |
B | VAL29 |
B | TYR31 |
B | ARG62 |
B | TYR73 |
B | MET75 |
B | HIS112 |
B | VAL113 |
B | GLN114 |
B | TYR138 |
B | TYR139 |
B | LYS140 |
B | ARG141 |
B | ACO201 |
B | HOH326 |
site_id | AC5 |
Number of Residues | 27 |
Details | binding site for residue ACO C 201 |
Chain | Residue |
C | SER119 |
C | ASP122 |
C | PHE123 |
C | LYS126 |
C | U3Y202 |
C | HOH301 |
C | HOH303 |
C | HOH305 |
C | HOH307 |
C | HOH311 |
C | HOH316 |
C | ILE26 |
C | PHE27 |
C | ILE74 |
C | THR76 |
C | LEU77 |
C | GLY78 |
C | CYS79 |
C | ARG84 |
C | ARG85 |
C | LEU86 |
C | GLY87 |
C | ILE88 |
C | GLY89 |
C | THR90 |
C | HIS112 |
C | ASN117 |
site_id | AC6 |
Number of Residues | 17 |
Details | binding site for residue U3Y C 202 |
Chain | Residue |
C | PHE27 |
C | VAL29 |
C | SER30 |
C | TYR31 |
C | ARG62 |
C | ASP64 |
C | TYR73 |
C | MET75 |
C | HIS112 |
C | VAL113 |
C | GLN114 |
C | TYR138 |
C | TYR139 |
C | LYS140 |
C | ARG141 |
C | ACO201 |
C | HOH308 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | Active site: {"evidences":[{"source":"PubMed","id":"21900231","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 15 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21900231","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27484799","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3TFY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4X5K","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 66 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21900231","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27484799","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"JUN-2007","submissionDatabase":"PDB data bank","title":"Structure of human MAK3 homolog.","authoringGroup":["Structural genomics consortium (SGC)"]}},{"source":"PDB","id":"2PSW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3TFY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4X5K","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 3 |
Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 3 |
Details | Modified residue: {"description":"N6-acetyllysine; by autocatalysis","evidences":[{"source":"PubMed","id":"19744929","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 3 |
Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"15592455","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 3 |
Details | Modified residue: {"description":"N6-acetyllysine; by autocatalysis","evidences":[{"source":"PubMed","id":"19744929","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |