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6W6D

Crystal Structure of Human Protein arginine N-methyltransferase 6 (PRMT6) in complex with SGC6870 inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0003682molecular_functionchromatin binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0006325biological_processchromatin organization
A0006338biological_processchromatin remodeling
A0006355biological_processregulation of DNA-templated transcription
A0006974biological_processDNA damage response
A0008168molecular_functionmethyltransferase activity
A0008469molecular_functionobsolete histone arginine N-methyltransferase activity
A0010821biological_processregulation of mitochondrion organization
A0016274molecular_functionprotein-arginine N-methyltransferase activity
A0016740molecular_functiontransferase activity
A0018216biological_processpeptidyl-arginine methylation
A0032259biological_processmethylation
A0033554biological_processcellular response to stress
A0035241molecular_functionprotein-arginine omega-N monomethyltransferase activity
A0035242molecular_functionprotein-arginine omega-N asymmetric methyltransferase activity
A0042054molecular_functionhistone methyltransferase activity
A0042393molecular_functionhistone binding
A0044020molecular_functionhistone H4R3 methyltransferase activity
A0045652biological_processregulation of megakaryocyte differentiation
A0045892biological_processnegative regulation of DNA-templated transcription
A0070611molecular_functionhistone H3R2 methyltransferase activity
A0070612molecular_functionhistone H2AR3 methyltransferase activity
A0090068biological_processpositive regulation of cell cycle process
A0140938molecular_functionhistone H3 methyltransferase activity
A2000059biological_processnegative regulation of ubiquitin-dependent protein catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue SAH A 401
ChainResidue
AARG66
APRO139
AVAL140
AGLU141
AGLU155
AMET166
ASER169
AHOH534
AHOH569
AHOH592
AGLY90
AALA91
AGLY92
ATHR93
ALEU96
AGLU112
AALA113
ASER114

site_idAC2
Number of Residues10
Detailsbinding site for residue T9A A 402
ChainResidue
ATRP156
AGLY158
ATYR159
AGLY160
AHIS163
AGLU164
ALEU256
APHE292
ALEU343
APRO345

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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