6W2L
Crystal structure of human dehydrodolichyl diphosphate synthase (NgBR/DHDDS) in complex with Mg and IPP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0002094 | molecular_function | polyprenyltransferase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005783 | cellular_component | endoplasmic reticulum |
A | 0005789 | cellular_component | endoplasmic reticulum membrane |
A | 0006486 | biological_process | protein glycosylation |
A | 0006489 | biological_process | dolichyl diphosphate biosynthetic process |
A | 0006629 | biological_process | lipid metabolic process |
A | 0016020 | cellular_component | membrane |
A | 0016094 | biological_process | polyprenol biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
A | 0045547 | molecular_function | dehydrodolichyl diphosphate synthase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 1904423 | cellular_component | dehydrodolichyl diphosphate synthase complex |
B | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
B | 0019408 | biological_process | dolichol biosynthetic process |
B | 1904423 | cellular_component | dehydrodolichyl diphosphate synthase complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue MG A 401 |
Chain | Residue |
A | ASP34 |
A | IPE402 |
A | IPE403 |
A | HOH506 |
site_id | AC2 |
Number of Residues | 13 |
Details | binding site for residue IPE A 402 |
Chain | Residue |
A | ARG38 |
A | HIS51 |
A | ALA77 |
A | ASN82 |
A | ARG85 |
A | MG401 |
A | IPE403 |
A | HOH506 |
A | MET33 |
A | ASP34 |
A | GLY35 |
A | ASN36 |
A | ARG37 |
site_id | AC3 |
Number of Residues | 19 |
Details | binding site for residue IPE A 403 |
Chain | Residue |
A | ILE32 |
A | MET33 |
A | ASP34 |
A | TYR76 |
A | ALA77 |
A | PHE78 |
A | ASN82 |
A | ARG85 |
A | ARG205 |
A | ARG211 |
A | SER213 |
A | MG401 |
A | IPE402 |
A | HOH506 |
A | HOH514 |
B | ARG290 |
B | LEU291 |
B | GLY292 |
B | HOH308 |
Functional Information from PROSITE/UniProt
site_id | PS01066 |
Number of Residues | 18 |
Details | UPP_SYNTHASE Undecaprenyl pyrophosphate synthase family signature. DILIRTSGevRlSdFLLW |
Chain | Residue | Details |
A | ASP201-TRP218 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 18 |
Details | TRANSMEM: Helical; Name=3 => ECO:0000303|PubMed:21572394 |
Chain | Residue | Details |
B | ILE117-TYR135 | |
A | ARG38 | |
A | ARG85 | |
A | ARG205 | |
A | ARG211 | |
A | SER213 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:32817466 |
Chain | Residue | Details |
B | LEU291 | |
B | GLY292 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:21572394 |
Chain | Residue | Details |
B | ASN144 | |
B | ASN271 |