Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6W01

The 1.9 A Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with a Citrate

Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue EDO A 401
ChainResidue
ALEU43
APHE44
AGLU45
ATRP59
AHOH506
AHOH573

site_idAC2
Number of Residues8
Detailsbinding site for residue EDO A 402
ChainResidue
BASN53
BGLU57
BCYS103
BSER104
BMET105
AGLU4
APRO24
AVAL25

site_idAC3
Number of Residues2
Detailsbinding site for residue EDO A 403
ChainResidue
AILE169
AGLY170

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
ALEU312
ASER313
AVAL314
ACYS334
ALYS335
AASP336
AGLY337

site_idAC5
Number of Residues6
Detailsbinding site for residue PEG A 405
ChainResidue
AHIS250
AASN278
AVAL292
ACYS293
ASER294
ACIT412

site_idAC6
Number of Residues6
Detailsbinding site for residue PEG A 406
ChainResidue
AASN75
ALEU76
AGLY77
ALYS181
APRO191
ATYR325

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 407
ChainResidue
AASN74
AGLY77
AVAL78
AASP79
AHOH564
AHOH588

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO A 408
ChainResidue
AGLU229
AGLY230
ATYR231
AGLY337
AHIS338
AHOH747

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 409
ChainResidue
AARG199
AASN200
ALEU201
AHOH670

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO A 410
ChainResidue
ATYR226
ALYS308

site_idAD2
Number of Residues3
Detailsbinding site for residue EDO A 411
ChainResidue
AGLU305
AHOH592
BARG136

site_idAD3
Number of Residues12
Detailsbinding site for residue CIT A 412
ChainResidue
AHIS235
AGLN245
ALEU246
AGLY247
AGLY248
AHIS250
ALYS290
ATHR341
ATYR343
APEG405
AHOH627
AHOH700

site_idAD4
Number of Residues4
Detailsbinding site for residue EDO A 413
ChainResidue
APRO158
ALYS159
AGLN160
AGLN197

site_idAD5
Number of Residues5
Detailsbinding site for residue EDO A 414
ChainResidue
AVAL156
AGLU192
ATHR193
APHE195
AHOH678

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO B 401
ChainResidue
BPHE44
BTRP59
BHOH502
BHOH516
BHOH561

site_idAD7
Number of Residues8
Detailsbinding site for residue EDO B 402
ChainResidue
AASN53
AGLU57
ACYS103
ASER104
AMET105
BGLU4
BPRO24
BVAL25

site_idAD8
Number of Residues5
Detailsbinding site for residue EDO B 403
ChainResidue
BSER274
BTHR275
BVAL276
BILE328
BHOH605

site_idAD9
Number of Residues5
Detailsbinding site for residue EDO B 404
ChainResidue
BHOH674
BASN74
BGLY77
BVAL78
BASP79

site_idAE1
Number of Residues4
Detailsbinding site for residue EDO B 405
ChainResidue
APRO191
AGLU327
BSER148
BHOH679

site_idAE2
Number of Residues5
Detailsbinding site for residue EDO B 406
ChainResidue
BGLU146
BVAL156
BLYS174
BGLN176
BASN178

site_idAE3
Number of Residues3
Detailsbinding site for residue EDO B 407
ChainResidue
BLYS159
BGLN160
BGLN197

site_idAE4
Number of Residues10
Detailsbinding site for residue CIT B 408
ChainResidue
BHIS235
BGLN245
BLEU246
BGLY247
BGLY248
BHIS250
BLYS290
BTHR341
BTYR343
BHOH670

site_idAE5
Number of Residues9
Detailsbinding site for residue EDO B 409
ChainResidue
ALYS320
AVAL321
ATHR322
AGLU327
BVAL149
BLYS150
BGLY151
BLEU152
BHOH591

site_idAE6
Number of Residues5
Detailsbinding site for residue EDO B 410
ChainResidue
BSER155
BVAL156
BGLU192
BTHR193
BPHE195

site_idAE7
Number of Residues4
Detailsbinding site for residue PEG B 411
ChainResidue
BASN75
BLEU76
BGLY77
BLYS181

site_idAE8
Number of Residues4
Detailsbinding site for residue EDO B 412
ChainResidue
BGLU192
BVAL321
BTHR322
BHOH515

site_idAE9
Number of Residues7
Detailsbinding site for residue EDO B 413
ChainResidue
AGLU192
BTHR145
BGLY147
BSER148
BHOH517
BHOH611
BHOH689

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor; for uridylate-specific endoribonuclease nsp15 activity => ECO:0000269|PubMed:33504779, ECO:0000269|PubMed:33564093
ChainResidueDetails
AHIS235
BHIS235

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor; for uridylate-specific endoribonuclease nsp15 activity => ECO:0000269|PubMed:33504779, ECO:0000269|PubMed:33564093
ChainResidueDetails
AHIS250
BHIS250

site_idSWS_FT_FI3
Number of Residues2
DetailsACT_SITE: For uridylate-specific endoribonuclease nsp15 activity => ECO:0000269|PubMed:33504779
ChainResidueDetails
ALYS290
BLYS290

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:33504779, ECO:0000269|PubMed:33564093
ChainResidueDetails
ALYS290
BLYS290

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:33564093
ChainResidueDetails
ATHR341
BTHR341

site_idSWS_FT_FI6
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000269|PubMed:33504779, ECO:0000269|PubMed:33564093
ChainResidueDetails
ALYS290
BLYS290

site_idSWS_FT_FI7
Number of Residues2
DetailsSITE: Uracil recognition site => ECO:0000269|PubMed:33504779, ECO:0000269|PubMed:33564093
ChainResidueDetails
ASER294
BSER294

site_idSWS_FT_FI8
Number of Residues2
DetailsSITE: Cleavage; by 3CL-PRO => ECO:0000250|UniProtKB:P0C6V3
ChainResidueDetails
AGLN347
BGLN347

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon