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6VYO

Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0019013cellular_componentviral nucleocapsid
B0003723molecular_functionRNA binding
B0019013cellular_componentviral nucleocapsid
C0003723molecular_functionRNA binding
C0019013cellular_componentviral nucleocapsid
D0003723molecular_functionRNA binding
D0019013cellular_componentviral nucleocapsid
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue MES A 201
ChainResidue
ATRP52
AASN75
AASN77
AASN154
AHOH303
DARG107
DHOH307
DHOH426

site_idAC2
Number of Residues5
Detailsbinding site for residue CL A 202
ChainResidue
AZN206
BASN77
BASP82
BHIS145
AHIS59

site_idAC3
Number of Residues8
Detailsbinding site for residue MES A 203
ChainResidue
ATHR54
AALA55
AARG107
AHOH392
BTRP52
BASN75
BASN77
BASN154

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 204
ChainResidue
AASP82
AHIS145
ACL205
DHIS59

site_idAC5
Number of Residues5
Detailsbinding site for residue CL A 205
ChainResidue
ASER79
AASP82
AHIS145
AZN204
DHIS59

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 206
ChainResidue
AHIS59
ACL202
BASP82
BHIS145

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL B 201
ChainResidue
AASN140
BARG68
BTYR123
BHOH344
BHOH383

site_idAC8
Number of Residues7
Detailsbinding site for residue MES B 202
ChainResidue
BARG92
BARG107
BHOH402
CTRP52
CASN75
CASN77
CASN154

site_idAC9
Number of Residues4
Detailsbinding site for residue ZN B 203
ChainResidue
BHIS59
CASP82
CHIS145
CCL201

site_idAD1
Number of Residues5
Detailsbinding site for residue CL C 201
ChainResidue
BHIS59
BZN203
CSER79
CASP82
CHIS145

site_idAD2
Number of Residues5
Detailsbinding site for residue CL C 202
ChainResidue
CHIS59
CZN205
DASN77
DASP82
DHIS145

site_idAD3
Number of Residues9
Detailsbinding site for residue GOL C 203
ChainResidue
CASN75
CTHR76
CSER78
CSER79
CPRO80
CGLN83
CHOH335
CHOH371
DARG95

site_idAD4
Number of Residues10
Detailsbinding site for residue MES C 204
ChainResidue
CTHR54
CALA55
CARG107
CHOH305
CHOH307
CHOH374
CHOH411
DTRP52
DASN75
DASN154

site_idAD5
Number of Residues4
Detailsbinding site for residue ZN C 205
ChainResidue
CHIS59
CCL202
DASP82
DHIS145

site_idAD6
Number of Residues6
Detailsbinding site for residue GOL D 201
ChainResidue
CASN140
CTHR141
DTYR123
DTRP132
DHOH368
DHOH373

site_idAD7
Number of Residues4
Detailsbinding site for residue GOL D 202
ChainResidue
DASN75
DSER78
DPRO80
DGLN83

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:33264373, ECO:0007744|PDB:7ACS, ECO:0007744|PDB:7ACT
ChainResidueDetails
AARG92
DARG92
DARG107
DARG149
AARG107
AARG149
BARG92
BARG107
BARG149
CARG92
CARG107
CARG149

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PDB entries from 2024-07-24

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