6VYO
Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0019013 | cellular_component | viral nucleocapsid |
| B | 0003723 | molecular_function | RNA binding |
| B | 0019013 | cellular_component | viral nucleocapsid |
| C | 0003723 | molecular_function | RNA binding |
| C | 0019013 | cellular_component | viral nucleocapsid |
| D | 0003723 | molecular_function | RNA binding |
| D | 0019013 | cellular_component | viral nucleocapsid |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | binding site for residue MES A 201 |
| Chain | Residue |
| A | TRP52 |
| A | ASN75 |
| A | ASN77 |
| A | ASN154 |
| A | HOH303 |
| D | ARG107 |
| D | HOH307 |
| D | HOH426 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue CL A 202 |
| Chain | Residue |
| A | ZN206 |
| B | ASN77 |
| B | ASP82 |
| B | HIS145 |
| A | HIS59 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue MES A 203 |
| Chain | Residue |
| A | THR54 |
| A | ALA55 |
| A | ARG107 |
| A | HOH392 |
| B | TRP52 |
| B | ASN75 |
| B | ASN77 |
| B | ASN154 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 204 |
| Chain | Residue |
| A | ASP82 |
| A | HIS145 |
| A | CL205 |
| D | HIS59 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue CL A 205 |
| Chain | Residue |
| A | SER79 |
| A | ASP82 |
| A | HIS145 |
| A | ZN204 |
| D | HIS59 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 206 |
| Chain | Residue |
| A | HIS59 |
| A | CL202 |
| B | ASP82 |
| B | HIS145 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 201 |
| Chain | Residue |
| A | ASN140 |
| B | ARG68 |
| B | TYR123 |
| B | HOH344 |
| B | HOH383 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue MES B 202 |
| Chain | Residue |
| B | ARG92 |
| B | ARG107 |
| B | HOH402 |
| C | TRP52 |
| C | ASN75 |
| C | ASN77 |
| C | ASN154 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue ZN B 203 |
| Chain | Residue |
| B | HIS59 |
| C | ASP82 |
| C | HIS145 |
| C | CL201 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue CL C 201 |
| Chain | Residue |
| B | HIS59 |
| B | ZN203 |
| C | SER79 |
| C | ASP82 |
| C | HIS145 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue CL C 202 |
| Chain | Residue |
| C | HIS59 |
| C | ZN205 |
| D | ASN77 |
| D | ASP82 |
| D | HIS145 |
| site_id | AD3 |
| Number of Residues | 9 |
| Details | binding site for residue GOL C 203 |
| Chain | Residue |
| C | ASN75 |
| C | THR76 |
| C | SER78 |
| C | SER79 |
| C | PRO80 |
| C | GLN83 |
| C | HOH335 |
| C | HOH371 |
| D | ARG95 |
| site_id | AD4 |
| Number of Residues | 10 |
| Details | binding site for residue MES C 204 |
| Chain | Residue |
| C | THR54 |
| C | ALA55 |
| C | ARG107 |
| C | HOH305 |
| C | HOH307 |
| C | HOH374 |
| C | HOH411 |
| D | TRP52 |
| D | ASN75 |
| D | ASN154 |
| site_id | AD5 |
| Number of Residues | 4 |
| Details | binding site for residue ZN C 205 |
| Chain | Residue |
| C | HIS59 |
| C | CL202 |
| D | ASP82 |
| D | HIS145 |
| site_id | AD6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL D 201 |
| Chain | Residue |
| C | ASN140 |
| C | THR141 |
| D | TYR123 |
| D | TRP132 |
| D | HOH368 |
| D | HOH373 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue GOL D 202 |
| Chain | Residue |
| D | ASN75 |
| D | SER78 |
| D | PRO80 |
| D | GLN83 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 80 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"33264373","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7ACS","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ACT","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
