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6VXK

Cryo-EM Structure of the full-length A39R/PlexinC1 complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0007411biological_processaxon guidance
A0030215molecular_functionsemaphorin receptor binding
A0030335biological_processpositive regulation of cell migration
A0045499molecular_functionchemorepellent activity
A0048843biological_processnegative regulation of axon extension involved in axon guidance
A0050919biological_processnegative chemotaxis
A0071526biological_processsemaphorin-plexin signaling pathway
B0002116cellular_componentsemaphorin receptor complex
B0005102molecular_functionsignaling receptor binding
B0005515molecular_functionprotein binding
B0005886cellular_componentplasma membrane
B0007155biological_processcell adhesion
B0007162biological_processnegative regulation of cell adhesion
B0008360biological_processregulation of cell shape
B0016020cellular_componentmembrane
B0017154molecular_functionsemaphorin receptor activity
B0030334biological_processregulation of cell migration
B0050772biological_processpositive regulation of axonogenesis
B0071526biological_processsemaphorin-plexin signaling pathway
B0150053cellular_componentcerebellar climbing fiber to Purkinje cell synapse
B1905806biological_processregulation of synapse pruning
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0007411biological_processaxon guidance
C0030215molecular_functionsemaphorin receptor binding
C0030335biological_processpositive regulation of cell migration
C0045499molecular_functionchemorepellent activity
C0048843biological_processnegative regulation of axon extension involved in axon guidance
C0050919biological_processnegative chemotaxis
C0071526biological_processsemaphorin-plexin signaling pathway
D0002116cellular_componentsemaphorin receptor complex
D0005102molecular_functionsignaling receptor binding
D0005515molecular_functionprotein binding
D0005886cellular_componentplasma membrane
D0007155biological_processcell adhesion
D0007162biological_processnegative regulation of cell adhesion
D0008360biological_processregulation of cell shape
D0016020cellular_componentmembrane
D0017154molecular_functionsemaphorin receptor activity
D0030334biological_processregulation of cell migration
D0050772biological_processpositive regulation of axonogenesis
D0071526biological_processsemaphorin-plexin signaling pathway
D0150053cellular_componentcerebellar climbing fiber to Purkinje cell synapse
D1905806biological_processregulation of synapse pruning
Functional Information from PROSITE/UniProt
site_idPS00284
Number of Residues11
DetailsSERPIN Serpins signature. LICNKSFLVtV
ChainResidueDetails
BLEU1059-VAL1069

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1818
DetailsTOPO_DOM: Extracellular => ECO:0000255
ChainResidueDetails
BALA35-THR944
DALA35-THR944

site_idSWS_FT_FI2
Number of Residues40
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
BTRP945-VAL965
DTRP945-VAL965

site_idSWS_FT_FI3
Number of Residues1204
DetailsTOPO_DOM: Cytoplasmic => ECO:0000255
ChainResidueDetails
BTHR966-MET1568
DTHR966-MET1568

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9QZC2
ChainResidueDetails
BSER978
DSER978

site_idSWS_FT_FI5
Number of Residues14
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:20727575
ChainResidueDetails
BASN86
DASN149
DASN241
DASN252
DASN386
DASN407
BASN141
BASN149
BASN241
BASN252
BASN386
BASN407
DASN86
DASN141

site_idSWS_FT_FI6
Number of Residues16
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
BASN548
DASN582
DASN653
DASN692
DASN771
DASN796
DASN821
DASN890
BASN582
BASN653
BASN692
BASN771
BASN796
BASN821
BASN890
DASN548

site_idSWS_FT_FI7
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498
ChainResidueDetails
BASN871
DASN871

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PDB entries from 2024-07-24

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