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6VKV

Co-crystal structure of GS-6207 bound to HIV-1 capsid hexamer

Functional Information from GO Data
ChainGOidnamespacecontents
A0016032biological_processviral process
B0016032biological_processviral process
C0016032biological_processviral process
Functional Information from PDB Data
site_idAC1
Number of Residues25
Detailsbinding site for residue QNG A 301
ChainResidue
AASN53
AILE73
AASN74
AALA105
ATHR107
ATYR130
AHOH411
AHOH413
BILE37
BPRO38
BSER41
ATHR54
BTYR169
BLEU172
BARG173
BGLN179
BLYS182
BHOH425
ALEU56
AASN57
AGLN63
AMET66
AGLN67
ALEU69
ALYS70

site_idAC2
Number of Residues1
Detailsbinding site for residue IOD A 303
ChainResidue
BARG18

site_idAC3
Number of Residues2
Detailsbinding site for residue IOD A 304
ChainResidue
AARG18
BPRO17

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 306
ChainResidue
AASN53
AGLY106
AHOH466

site_idAC5
Number of Residues2
Detailsbinding site for residue CL A 307
ChainResidue
AARG162
AHOH430

site_idAC6
Number of Residues1
Detailsbinding site for residue CL A 308
ChainResidue
BARG18

site_idAC7
Number of Residues24
Detailsbinding site for residue QNG B 301
ChainResidue
AILE37
APRO38
ASER41
ATYR169
ALEU172
AARG173
AGLN179
ALYS182
BASN53
BTHR54
BLEU56
BASN57
BGLN63
BMET66
BGLN67
BLEU69
BLYS70
BILE73
BASN74
BALA105
BTHR107
BTYR130
BHOH408
BHOH443

site_idAC8
Number of Residues2
Detailsbinding site for residue IOD B 302
ChainResidue
AGLN95
BLYS158

site_idAC9
Number of Residues4
Detailsbinding site for residue CL B 303
ChainResidue
BGLN50
BASN53
BGLY106
BHOH463

site_idAD1
Number of Residues3
Detailsbinding site for residue CL B 304
ChainResidue
BARG162
BGLN219
BHOH416

site_idAD2
Number of Residues3
Detailsbinding site for residue CL B 306
ChainResidue
AARG18
BPRO17
BARG18

site_idAD3
Number of Residues28
Detailsbinding site for residue QNG C 301
ChainResidue
CILE37
CPRO38
CSER41
CGLN50
CASN53
CTHR54
CLEU56
CASN57
CGLN63
CMET66
CGLN67
CLEU69
CLYS70
CILE73
CASN74
CALA105
CTHR107
CTYR130
CILE135
CTYR169
CLEU172
CARG173
CGLN179
CLYS182
CASN183
CCL308
CHOH411
CHOH439

site_idAD4
Number of Residues2
Detailsbinding site for residue CL C 304
ChainResidue
CMET215
CARG162

site_idAD5
Number of Residues4
Detailsbinding site for residue CL C 305
ChainResidue
CGLN50
CASN53
CGLY106
CHOH481

site_idAD6
Number of Residues1
Detailsbinding site for residue CL C 306
ChainResidue
CPRO17

site_idAD7
Number of Residues2
Detailsbinding site for residue CL C 308
ChainResidue
CQNG301
CHOH436

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
ALEU231
BLEU231
CLEU231

site_idSWS_FT_FI2
Number of Residues3
DetailsMOD_RES: Phosphoserine; by host MAPK1 => ECO:0000269|PubMed:24509437
ChainResidueDetails
ASER16
BSER16
CSER16

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PDB entries from 2024-07-24

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