6VKV
Co-crystal structure of GS-6207 bound to HIV-1 capsid hexamer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2019-11-09 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00003 |
Spacegroup name | P 6 |
Unit cell lengths | 160.050, 160.050, 57.526 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.260 - 2.220 |
R-factor | 0.2332 |
Rwork | 0.231 |
R-free | 0.26850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6pu1 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.972 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.710 | 2.290 |
High resolution limit [Å] | 2.220 | 2.220 |
Rpim | 0.101 | 0.970 |
Number of reflections | 41892 | 3828 |
<I/σ(I)> | 8 | 1 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 10.7 | 8.6 |
CC(1/2) | 0.994 | 0.470 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277.15 | 0.125-0.35M Sodium Iodide, 3-12% Peg 3350, 6% glycerol, 0.1M sodium cacodylate pH 6.5 |