6VKD
Crystal Structure of Inhibitor JNJ-36689282 in Complex with Prefusion RSV F Glycoprotein
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| F | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue R0P F 601 |
| Chain | Residue |
| F | PHE137 |
| F | PHE137 |
| F | PHE140 |
| F | PHE140 |
| F | PHE488 |
| F | PHE488 |
| F | PHE488 |
| F | SO4606 |
| F | HOH703 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue CL F 602 |
| Chain | Residue |
| F | TRP52 |
| F | TYR458 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 F 603 |
| Chain | Residue |
| F | LEU273 |
| F | ASN277 |
| F | ARG364 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 F 604 |
| Chain | Residue |
| F | LYS427 |
| F | ASN444 |
| F | LYS445 |
| F | GLY446 |
| F | LYS461 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 F 605 |
| Chain | Residue |
| F | SER443 |
| F | LYS445 |
| F | GLY464 |
| F | LYS465 |
| F | SER466 |
| F | HOH727 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 F 606 |
| Chain | Residue |
| F | PHE137 |
| F | GLY139 |
| F | GLN354 |
| F | R0P601 |
| F | HOH703 |
| F | HOH707 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 F 607 |
| Chain | Residue |
| F | LEU193 |
| F | ASP194 |
| F | LYS226 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 F 608 |
| Chain | Residue |
| F | LYS293 |
| F | GLU294 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 20 |
| Details | Region: {"description":"Fusion peptide","evidences":[{"source":"UniProtKB","id":"P11209","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 20 |
| Details | Coiled coil: {"evidences":[{"source":"PubMed","id":"10846072","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29212939","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 51 |
| Details | Coiled coil: {"evidences":[{"source":"PubMed","id":"19966279","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31268705","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10846072","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"PubMed","id":"21586636","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
