6VK8
Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex with small organic carboxylate at active center
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004497 | molecular_function | monooxygenase activity |
A | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
A | 0006730 | biological_process | one-carbon metabolic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0106317 | molecular_function | obsolete methane monooxygenase NADH activity |
A | 0106318 | molecular_function | obsolete methane monooxygenase NADPH activity |
B | 0004497 | molecular_function | monooxygenase activity |
B | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016709 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen |
C | 0004497 | molecular_function | monooxygenase activity |
C | 0015049 | molecular_function | methane monooxygenase [NAD(P)H] activity |
C | 0015947 | biological_process | methane metabolic process |
D | 0004497 | molecular_function | monooxygenase activity |
D | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
E | 0004497 | molecular_function | monooxygenase activity |
E | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
E | 0006730 | biological_process | one-carbon metabolic process |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0046872 | molecular_function | metal ion binding |
E | 0106317 | molecular_function | obsolete methane monooxygenase NADH activity |
E | 0106318 | molecular_function | obsolete methane monooxygenase NADPH activity |
F | 0004497 | molecular_function | monooxygenase activity |
F | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
F | 0016491 | molecular_function | oxidoreductase activity |
F | 0016709 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen |
G | 0004497 | molecular_function | monooxygenase activity |
G | 0015049 | molecular_function | methane monooxygenase [NAD(P)H] activity |
G | 0015947 | biological_process | methane metabolic process |
H | 0004497 | molecular_function | monooxygenase activity |
H | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue FE A 801 |
Chain | Residue |
A | GLU114 |
A | GLU144 |
A | HIS147 |
A | FE802 |
A | SIN803 |
A | HOH909 |
A | HOH919 |
site_id | AC2 |
Number of Residues | 7 |
Details | binding site for residue FE A 802 |
Chain | Residue |
A | GLU243 |
A | HIS246 |
A | FE801 |
A | SIN803 |
A | HOH919 |
A | GLU144 |
A | GLU209 |
site_id | AC3 |
Number of Residues | 11 |
Details | binding site for residue SIN A 803 |
Chain | Residue |
A | LEU110 |
A | GLU114 |
A | GLU144 |
A | PHE188 |
A | GLU209 |
A | THR213 |
A | GLU243 |
A | FE801 |
A | FE802 |
A | HOH909 |
A | HOH919 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue EDO A 804 |
Chain | Residue |
A | GLN406 |
A | HOH1087 |
B | TYR304 |
B | ASN308 |
B | HOH519 |
site_id | AC5 |
Number of Residues | 7 |
Details | binding site for residue EDO A 805 |
Chain | Residue |
A | ARG98 |
A | THR102 |
A | TYR288 |
A | LEU289 |
A | GLY293 |
A | HOH903 |
A | HOH905 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue EDO A 806 |
Chain | Residue |
A | HOH964 |
A | HOH1005 |
A | HOH1081 |
A | HOH1127 |
B | TRP46 |
B | LYS47 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue EDO A 807 |
Chain | Residue |
A | VAL105 |
A | LEU180 |
A | GLY357 |
A | PHE358 |
A | ALA359 |
A | EDO808 |
A | HOH903 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue EDO A 808 |
Chain | Residue |
A | ALA350 |
A | MET353 |
A | TRP354 |
A | EDO807 |
A | HOH903 |
A | HOH926 |
site_id | AC9 |
Number of Residues | 8 |
Details | binding site for residue EDO A 809 |
Chain | Residue |
A | ASN272 |
A | GLU327 |
A | SER328 |
A | PRO329 |
A | ALA330 |
A | HOH907 |
A | HOH1140 |
C | TYR149 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue EDO B 401 |
Chain | Residue |
B | SER310 |
B | GLU311 |
B | HOH504 |
site_id | AD2 |
Number of Residues | 5 |
Details | binding site for residue EDO B 402 |
Chain | Residue |
A | PHE153 |
B | GLU51 |
B | HIS110 |
B | HOH543 |
H | LYS97 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue EDO B 403 |
Chain | Residue |
B | ALA257 |
B | VAL364 |
B | TRP368 |
B | ASP371 |
B | HOH532 |
B | HOH691 |
site_id | AD4 |
Number of Residues | 8 |
Details | binding site for residue EDO C 201 |
Chain | Residue |
C | ARG4 |
C | ILE12 |
C | ASP49 |
C | ILE50 |
C | ASP51 |
C | VAL52 |
C | ASP53 |
C | HOH340 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue EDO D 201 |
Chain | Residue |
A | TRP341 |
A | HOH974 |
D | PHE25 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue EDO D 202 |
Chain | Residue |
A | ARG77 |
D | GLU47 |
D | PHE99 |
D | ASP103 |
D | ASN107 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue EDO D 203 |
Chain | Residue |
E | ARG88 |
B | ARG12 |
D | LYS44 |
D | ALA73 |
D | HOH301 |
D | HOH314 |
site_id | AD8 |
Number of Residues | 7 |
Details | binding site for residue FE E 801 |
Chain | Residue |
E | GLU114 |
E | GLU144 |
E | HIS147 |
E | FE802 |
E | BEZ803 |
E | HOH919 |
E | HOH959 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue FE E 802 |
Chain | Residue |
E | GLU144 |
E | GLU209 |
E | GLU243 |
E | HIS246 |
E | FE801 |
E | BEZ803 |
E | HOH959 |
site_id | AE1 |
Number of Residues | 11 |
Details | binding site for residue BEZ E 803 |
Chain | Residue |
E | GLU114 |
E | GLU144 |
E | PHE188 |
E | PHE192 |
E | GLU209 |
E | THR213 |
E | GLU243 |
E | FE801 |
E | FE802 |
E | HOH919 |
E | HOH959 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue EDO E 804 |
Chain | Residue |
E | ARG489 |
E | GLY492 |
E | HOH943 |
E | HOH1049 |
E | HOH1094 |
site_id | AE3 |
Number of Residues | 6 |
Details | binding site for residue EDO E 805 |
Chain | Residue |
B | ASP367 |
E | LEU14 |
E | LYS15 |
E | VAL16 |
E | ARG18 |
F | ARG137 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue EDO E 806 |
Chain | Residue |
E | ASP414 |
E | PRO520 |
E | HOH1017 |
site_id | AE5 |
Number of Residues | 9 |
Details | binding site for residue EDO E 807 |
Chain | Residue |
E | ASN273 |
E | GLN456 |
E | GLU460 |
E | ARG463 |
E | TYR464 |
E | EDO808 |
E | HOH934 |
E | HOH1035 |
G | TYR148 |
site_id | AE6 |
Number of Residues | 8 |
Details | binding site for residue EDO E 808 |
Chain | Residue |
E | ARG186 |
E | ASN203 |
E | ALA274 |
E | THR277 |
E | EDO807 |
E | HOH932 |
E | HOH1004 |
F | GLN77 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue EDO E 809 |
Chain | Residue |
E | ASP451 |
E | TRP452 |
E | ARG455 |
E | HOH1030 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue EDO F 401 |
Chain | Residue |
B | PHE126 |
B | THR278 |
F | GLN269 |
F | PRO281 |
F | ALA285 |
F | HOH522 |
site_id | AE9 |
Number of Residues | 4 |
Details | binding site for residue EDO F 402 |
Chain | Residue |
D | LYS97 |
E | PHE79 |
F | GLU51 |
F | HOH538 |
site_id | AF1 |
Number of Residues | 3 |
Details | binding site for residue EDO F 403 |
Chain | Residue |
F | LYS150 |
F | TYR151 |
F | HOH529 |
site_id | AF2 |
Number of Residues | 8 |
Details | binding site for residue EDO G 201 |
Chain | Residue |
G | ARG4 |
G | ILE12 |
G | ASP49 |
G | ILE50 |
G | ASP51 |
G | VAL52 |
G | ASP53 |
G | HOH303 |
site_id | AF3 |
Number of Residues | 3 |
Details | binding site for residue EDO G 202 |
Chain | Residue |
G | ASP27 |
G | THR83 |
G | HOH334 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: ACT_SITE => ECO:0000255 |
Chain | Residue | Details |
A | CYS151 | |
E | CYS151 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | GLU114 | |
E | GLU209 | |
E | GLU243 | |
E | HIS246 | |
A | GLU144 | |
A | HIS147 | |
A | GLU209 | |
A | GLU243 | |
A | HIS246 | |
E | GLU114 | |
E | GLU144 | |
E | HIS147 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 600 |
Chain | Residue | Details |
A | GLU114 | metal ligand |
A | GLU144 | metal ligand |
A | HIS147 | metal ligand |
A | GLU209 | metal ligand |
A | GLU243 | hydrogen bond donor, metal ligand |
A | HIS246 | metal ligand |
site_id | MCSA2 |
Number of Residues | 6 |
Details | M-CSA 600 |
Chain | Residue | Details |
E | GLU114 | metal ligand |
E | GLU144 | metal ligand |
E | HIS147 | metal ligand |
E | GLU209 | metal ligand |
E | GLU243 | hydrogen bond donor, metal ligand |
E | HIS246 | metal ligand |