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6VFA

DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MN A 501
ChainResidue
AASP330
AASP332
AASP418
AMN502
A8GT508
AHOH785
PHOH106

site_idAC2
Number of Residues5
Detailsbinding site for residue MN A 502
ChainResidue
AMN501
A8GT508
AHOH669
AASP330
AASP332

site_idAC3
Number of Residues3
Detailsbinding site for residue MN A 503
ChainResidue
AHIS152
AHOH742
AHOH816

site_idAC4
Number of Residues5
Detailsbinding site for residue MN A 504
ChainResidue
AHIS208
AHOH795
DDG1
DHOH212
DHOH215

site_idAC5
Number of Residues3
Detailsbinding site for residue MN A 505
ChainResidue
AGLU218
AHIS219
AHOH787

site_idAC6
Number of Residues5
Detailsbinding site for residue MN A 506
ChainResidue
AGLU386
AHIS459
AHOH783
AHOH809
THOH201

site_idAC7
Number of Residues6
Detailsbinding site for residue NA A 507
ChainResidue
ATHR241
AILE243
AVAL246
AHOH601
PDT3
PHOH104

site_idAC8
Number of Residues17
Detailsbinding site for residue 8GT A 508
ChainResidue
AGLN242
AGLY319
AGLY320
AARG323
ALYS325
AGLY328
AHIS329
AASP330
AASP332
ALYS438
AMN501
AMN502
AHOH601
AHOH669
AHOH677
AHOH777
PHOH106

site_idAC9
Number of Residues8
Detailsbinding site for residue EDO A 509
ChainResidue
AARG387
AARG445
AASN457
ASER458
AHIS459
AHOH768
TDT6
TDA7

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO A 510
ChainResidue
AARG322
ASER474
AGLU475
AGLU476
ATYR486
AHOH713

site_idAD2
Number of Residues4
Detailsbinding site for residue EPE A 511
ChainResidue
ALEU149
ALYS325
ALEU326
AGLN327

site_idAD3
Number of Residues3
Detailsbinding site for residue DTT A 512
ChainResidue
ACYS180
AHOH781
AHOH828

site_idAD4
Number of Residues4
Detailsbinding site for residue MN T 101
ChainResidue
TDG2
THOH203
THOH210
THOH226

site_idAD5
Number of Residues3
Detailsbinding site for residue MN D 101
ChainResidue
DDG1
DHOH201
DHOH217

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGklqGhDVDFLIthP
ChainResidueDetails
AGLY319-PRO338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues9
DetailsRegion: {"description":"Involved in ssDNA binding","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsSite: {"description":"Responsible for the low discrimination between dNTP and rNTP"}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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