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6VF7

DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MN A 501
ChainResidue
AHIS329
A8DG508
AHOH646
AHOH674
AHOH820

site_idAC2
Number of Residues6
Detailsbinding site for residue MN A 502
ChainResidue
PDA4
PHOH101
AASP330
AASP332
AASP418
A8DG508

site_idAC3
Number of Residues4
Detailsbinding site for residue MN A 503
ChainResidue
AASP330
AASP332
A8DG508
AHOH635

site_idAC4
Number of Residues5
Detailsbinding site for residue MN A 504
ChainResidue
AGLU386
AHIS459
AHOH734
AHOH810
THOH202

site_idAC5
Number of Residues6
Detailsbinding site for residue MN A 505
ChainResidue
AHIS208
AHOH790
AHOH805
DDG1
DHOH202
DHOH208

site_idAC6
Number of Residues2
Detailsbinding site for residue MN A 506
ChainResidue
AHIS219
AHOH641

site_idAC7
Number of Residues6
Detailsbinding site for residue NA A 507
ChainResidue
ATHR241
AILE243
AVAL246
AHOH814
PDT3
PHOH111

site_idAC8
Number of Residues24
Detailsbinding site for residue 8DG A 508
ChainResidue
AGLY319
AGLY320
AARG323
AGLY328
AHIS329
AASP330
AASP332
AGLY433
ATRP434
AGLY436
ALYS438
AMN501
AMN502
AMN503
AEDO511
AHOH635
AHOH646
AHOH674
AHOH686
AHOH704
PDA4
PHOH101
PHOH106
TDA5

site_idAC9
Number of Residues1
Detailsbinding site for residue DTT A 509
ChainResidue
ACYS180

site_idAD1
Number of Residues4
Detailsbinding site for residue EPE A 510
ChainResidue
ALYS325
ALEU326
AGLN327
AHOH660

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO A 511
ChainResidue
AARG387
AGLY433
ATRP434
AARG445
ASER458
A8DG508
AHOH621
PDA4

site_idAD3
Number of Residues4
Detailsbinding site for residue EDO A 512
ChainResidue
APRO190
ASER191
AGLN198
AHOH662

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 513
ChainResidue
APHE462
APHE469
AHOH632

site_idAD5
Number of Residues3
Detailsbinding site for residue MN T 101
ChainResidue
TDG2
THOH203
THOH212

site_idAD6
Number of Residues3
Detailsbinding site for residue MN D 101
ChainResidue
DDG1
DHOH211
DHOH212

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGklqGhDVDFLIthP
ChainResidueDetails
AGLY319-PRO338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP330
AASP332
AALA430

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Responsible for the low discrimination between dNTP and rNTP
ChainResidueDetails
AARG445

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PDB entries from 2024-11-06

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