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6VF4

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue MN A 501
ChainResidue
AASP330
AASP332
AASP418
AMN502
A8GT511
PDA4
P8GM5
PHOH202

site_idAC2
Number of Residues7
Detailsbinding site for residue MN A 502
ChainResidue
AASP332
AMN501
APPV506
A8GT511
AHOH632
P8GM5
AASP330

site_idAC3
Number of Residues3
Detailsbinding site for residue MN A 503
ChainResidue
AHIS208
AHOH695
DDG1

site_idAC4
Number of Residues5
Detailsbinding site for residue MN A 504
ChainResidue
AGLU386
AHIS459
AHOH761
AHOH786
THOH202

site_idAC5
Number of Residues6
Detailsbinding site for residue NA A 505
ChainResidue
ATHR241
AILE243
AVAL246
AHOH782
PDT3
PHOH213

site_idAC6
Number of Residues14
Detailsbinding site for residue PPV A 506
ChainResidue
AGLY319
AGLY320
AARG323
ALYS325
AGLY328
AHIS329
AASP330
AASP332
AMN502
A8GT511
AHOH601
AHOH632
AHOH680
P8GM5

site_idAC7
Number of Residues1
Detailsbinding site for residue DTT A 507
ChainResidue
ACYS180

site_idAC8
Number of Residues4
Detailsbinding site for residue EPE A 508
ChainResidue
ALYS325
ALEU326
AGLN327
AHOH657

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO A 509
ChainResidue
APHE462
AHOH697

site_idAD1
Number of Residues3
Detailsbinding site for residue EDO A 510
ChainResidue
APRO190
ASER191
AGLN198

site_idAD2
Number of Residues27
Detailsbinding site for residue 8GT A 511
ChainResidue
AGLY319
AGLY320
AARG323
ALYS325
AGLY328
AHIS329
AASP330
AASP332
AGLY433
ATRP434
AGLY436
ASER437
ALYS438
AGLN441
AMN501
AMN502
APPV506
AHOH601
AHOH632
AHOH633
AHOH680
PDA4
P8GM5
PEDO101
PHOH201
PHOH202
TDA5

site_idAD3
Number of Residues3
Detailsbinding site for residue MN T 101
ChainResidue
TDG2
THOH201
THOH203

site_idAD4
Number of Residues8
Detailsbinding site for residue EDO P 101
ChainResidue
AARG387
AGLY433
ATRP434
AARG445
A8GT511
PDA4
P8GM5
PHOH205

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGklqGhDVDFLIthP
ChainResidueDetails
AGLY319-PRO338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues9
DetailsRegion: {"description":"Involved in ssDNA binding","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsSite: {"description":"Responsible for the low discrimination between dNTP and rNTP"}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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