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6VCZ

Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004478molecular_functionmethionine adenosyltransferase activity
A0005507molecular_functioncopper ion binding
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006556biological_processS-adenosylmethionine biosynthetic process
A0006730biological_processone-carbon metabolic process
A0009505cellular_componentplant-type cell wall
A0009506cellular_componentplasmodesma
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
A0070062cellular_componentextracellular exosome
B0004478molecular_functionmethionine adenosyltransferase activity
B0005507molecular_functioncopper ion binding
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005730cellular_componentnucleolus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006556biological_processS-adenosylmethionine biosynthetic process
B0006730biological_processone-carbon metabolic process
B0009505cellular_componentplant-type cell wall
B0009506cellular_componentplasmodesma
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
B0070062cellular_componentextracellular exosome
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue PO4 A 401
ChainResidue
AHIS15
AHOH574
AHOH687
AHOH699
BASP122
BMG408
BHOH601
AASP17
ALYS169
ALYS253
APO4402
AMG405
AMG406
AHOH508
AHOH538

site_idAC2
Number of Residues15
Detailsbinding site for residue PO4 A 402
ChainResidue
AASP17
AARG252
ALYS253
APO4401
AMG405
AHOH508
AHOH518
AHOH579
AHOH699
AHOH765
BGLY268
BALA269
BLYS273
BASP279
BMG408

site_idAC3
Number of Residues9
Detailsbinding site for residue PO4 A 403
ChainResidue
ALYS169
APHE238
AHOH543
AHOH574
AHOH578
AHOH597
BASP122
BILE310
BHOH698

site_idAC4
Number of Residues6
Detailsbinding site for residue PO4 A 404
ChainResidue
APRO135
AGLU136
ALYS291
AGLU381
AHOH507
AHOH693

site_idAC5
Number of Residues7
Detailsbinding site for residue MG A 405
ChainResidue
AASP17
ALYS253
APO4401
APO4402
AHOH579
AHOH687
AHOH699

site_idAC6
Number of Residues6
Detailsbinding site for residue MG A 406
ChainResidue
APO4401
AHOH522
AHOH534
AHOH538
AHOH574
AHOH805

site_idAC7
Number of Residues7
Detailsbinding site for residue MG A 407
ChainResidue
ALYS273
AASP279
AHOH608
AHOH725
BPO4401
BPO4402
BHOH510

site_idAC8
Number of Residues5
Detailsbinding site for residue PGR A 408
ChainResidue
APRO135
AGLU136
AVAL143
ALYS147
AHOH546

site_idAC9
Number of Residues18
Detailsbinding site for residue PO4 B 401
ChainResidue
AASP122
AMG407
AHOH608
AHOH725
BHIS15
BASP17
BLYS169
BLYS253
BPO4402
BMG405
BMG406
BHOH510
BHOH538
BHOH606
BHOH639
BHOH689
BHOH722
BHOH818

site_idAD1
Number of Residues15
Detailsbinding site for residue PO4 B 402
ChainResidue
BHOH541
BHOH603
BHOH722
BHOH790
AGLY268
AALA269
ALYS273
AASP279
AMG407
BASP17
BARG252
BLYS253
BPO4401
BMG405
BHOH510

site_idAD2
Number of Residues9
Detailsbinding site for residue PO4 B 403
ChainResidue
AASP122
AHOH691
BLYS169
BPHE238
BHOH518
BHOH521
BHOH558
BHOH639
BHOH641

site_idAD3
Number of Residues12
Detailsbinding site for residue PO4 B 404
ChainResidue
APRO329
AASP330
AHOH592
AHOH718
BMG407
BHOH501
BHOH507
BHOH535
BHOH556
BHOH727
BHOH742
BHOH750

site_idAD4
Number of Residues7
Detailsbinding site for residue MG B 405
ChainResidue
BASP17
BLYS253
BPO4401
BPO4402
BHOH603
BHOH689
BHOH722

site_idAD5
Number of Residues6
Detailsbinding site for residue MG B 406
ChainResidue
BPO4401
BHOH536
BHOH538
BHOH606
BHOH639
BHOH818

site_idAD6
Number of Residues6
Detailsbinding site for residue MG B 407
ChainResidue
AHOH592
AHOH609
AHOH718
BPO4404
BHOH535
BHOH556

site_idAD7
Number of Residues7
Detailsbinding site for residue MG B 408
ChainResidue
APO4401
APO4402
AHOH508
BLYS273
BASP279
BHOH601
BHOH763

site_idAD8
Number of Residues8
Detailsbinding site for residue MPO B 409
ChainResidue
BASP64
BGLU66
BLYS67
BARG70
BHOH507
BHOH563
BHOH690
BHOH738

site_idAD9
Number of Residues4
Detailsbinding site for residue MXE B 410
ChainResidue
BGLU199
BHOH577
BHOH717
BHOH780

site_idAE1
Number of Residues6
Detailsbinding site for residue PGR B 411
ChainResidue
BGLU136
BVAL143
BLYS147
BPRO220
BHOH591
BHOH619

site_idAE2
Number of Residues11
Detailsbinding site for residue PGE B 412
ChainResidue
ATYR129
AASN178
ATRP262
AGLY263
AARG301
ATYR323
AHOH552
BPHE319
BASP321
BHOH516
BHOH524

site_idAE3
Number of Residues13
Detailsbinding site for residue PGE B 413
ChainResidue
AALA264
APHE319
AHOH737
AHOH815
BGLY261
BTRP262
BGLY263
BARG301
BHOH509
BHOH513
BHOH752
BHOH804
BHOH875

Functional Information from PROSITE/UniProt
site_idPS00376
Number of Residues11
DetailsADOMET_SYNTHASE_1 S-adenosylmethionine synthase signature 1. GAGDQGhmfGY
ChainResidueDetails
AGLY119-TYR129

site_idPS00377
Number of Residues9
DetailsADOMET_SYNTHASE_2 S-adenosylmethionine synthase signature 2. GGGAFSgKD
ChainResidueDetails
AGLY266-ASP274

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P13444
ChainResidueDetails
AGLU9
BGLU9

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: in other chain => ECO:0000250|UniProtKB:Q00266
ChainResidueDetails
AHIS15
AASP167
ASER235
BHIS15
BASP167
BSER235

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P0A817
ChainResidueDetails
AGLU43
AASP246
AALA269
ALYS273
BGLU43
BASP246
BALA269
BLYS273

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: in other chain => ECO:0000250|UniProtKB:P0A817
ChainResidueDetails
AGLU56
AGLN99
AARG252
ALYS277
BGLU56
BGLN99
BARG252
BLYS277

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PDB entries from 2024-07-17

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