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6VCQ

Crystal structure of E.coli RppH in complex with GTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006402biological_processmRNA catabolic process
A0008033biological_processtRNA processing
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
A0034353molecular_functionmRNA 5'-diphosphatase activity
A0050779biological_processRNA destabilization
A0110153molecular_functionRNA NAD-cap (NMN-forming) hydrolase activity
A0110154biological_processRNA decapping
A0110155biological_processNAD-cap decapping
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue GTP A 201
ChainResidue
AARG8
AGLN95
AVAL137
APHE139
ALYS140
AHOH320
AHOH321
AHOH330
AHOH335
AHOH342
AHOH377
AASN10
AARG27
ASER32
AGLN37
AGLY38
ATYR77
ALEU79
ALEU83

site_idAC2
Number of Residues11
Detailsbinding site for residue SO4 A 202
ChainResidue
AGLU47
AGLN48
ATYR51
AARG62
AILE67
AARG134
AHOH333
AHOH354
AHOH367
AHOH397
AHOH405

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 203
ChainResidue
AILE2
ATHR71
AARG72
AASN73
AHOH309

site_idAC4
Number of Residues8
Detailsbinding site for residue SO4 A 204
ChainResidue
AARG18
AARG26
AHIS31
ATRP33
AARG66
AGLN103
AHOH314
AHOH356

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 A 205
ChainResidue
AASN17
AARG18
AGLN19
AHOH312
AHOH316

site_idAC6
Number of Residues7
Detailsbinding site for residue SO4 A 206
ChainResidue
ASER61
AARG62
ALYS63
AARG141
AARG145
AHOH303
AHOH304

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GginpgEsaeqAMyRELfEEvG
ChainResidueDetails
AGLY38-GLY59

221051

PDB entries from 2024-06-12

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