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6UIL

Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptan-2-one

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008270molecular_functionzinc ion binding
A0016236biological_processmacroautophagy
A0016787molecular_functionhydrolase activity
A0019213molecular_functiondeacetylase activity
A0033558molecular_functionprotein lysine deacetylase activity
A0035825biological_processhomologous recombination
A0036269biological_processswimming behavior
A0046872molecular_functionmetal ion binding
A0047609molecular_functionacetylputrescine deacetylase activity
A0047611molecular_functionacetylspermidine deacetylase activity
A0106047biological_processpolyamine deacetylation
A0106048biological_processspermidine deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue FKS A 701
ChainResidue
AALA24
ATRP205
AASP267
AGLU274
AGLU304
AGLY305
ATYR307
AZN704
AASP94
APRO134
AHIS136
AHIS137
APHE146
ACYS147
AASP174
AHIS176

site_idAC2
Number of Residues5
Detailsbinding site for residue PO4 A 702
ChainResidue
AHIS201
AASN231
ALYS232
ASER340
AGLU343

site_idAC3
Number of Residues4
Detailsbinding site for residue PO4 A 703
ChainResidue
AHIS201
AASP212
ATYR213
AASN231

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 704
ChainResidue
AASP174
AHIS176
AASP267
AFKS701

site_idAC5
Number of Residues5
Detailsbinding site for residue K A 705
ChainResidue
AASP172
AASP174
AHIS176
ASER195
ATRP196

site_idAC6
Number of Residues6
Detailsbinding site for residue K A 706
ChainResidue
APHE185
AASP188
AVAL191
APHE224
AHOH808
AHOH811

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton donor/acceptor => ECO:0000269|PubMed:28516954, ECO:0007744|PDB:5TD7
ChainResidueDetails
AHIS137

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:28516954, ECO:0007744|PDB:5TD7
ChainResidueDetails
AASP22
AASP94
AASP174
AHIS176
AASP267
ATYR307

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate specificity => ECO:0000269|PubMed:28516954
ChainResidueDetails
AGLU274

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PDB entries from 2025-06-18

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