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6U06

Discovery of Lysine-Targeted eIF4E Inhibitors through Covalent Docking

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0003743molecular_functiontranslation initiation factor activity
A0005737cellular_componentcytoplasm
A0006413biological_processtranslational initiation
B0003723molecular_functionRNA binding
B0003743molecular_functiontranslation initiation factor activity
B0005737cellular_componentcytoplasm
B0006413biological_processtranslational initiation
C0003723molecular_functionRNA binding
C0003743molecular_functiontranslation initiation factor activity
C0005737cellular_componentcytoplasm
C0006413biological_processtranslational initiation
D0003723molecular_functionRNA binding
D0003743molecular_functiontranslation initiation factor activity
D0005737cellular_componentcytoplasm
D0006413biological_processtranslational initiation
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue EI8 A 301
ChainResidue
ALEU60
AARG157
ALYS162
ATRP166
AHOH427
AASP90
ASER92
APRO100
AMET101
ATRP102
AGLU103
AARG112
AASN155

site_idAC2
Number of Residues15
Detailsbinding site for Di-peptide EI8 B 301 and LYS B 162
ChainResidue
BLEU60
BASP90
BSER92
BPRO100
BMET101
BTRP102
BGLU103
BARG112
BILE115
BVAL154
BASN155
BARG157
BASP161
BILE163
BTRP166

site_idAC3
Number of Residues14
Detailsbinding site for Di-peptide EI8 C 301 and LYS C 162
ChainResidue
CASP90
CSER92
CPRO100
CMET101
CTRP102
CGLU103
CARG112
CILE115
CVAL154
CASN155
CARG157
CASP161
CILE163
CHOH406

site_idAC4
Number of Residues14
Detailsbinding site for Di-peptide EI8 D 301 and LYS D 162
ChainResidue
DLEU60
DASP90
DSER92
DPRO100
DMET101
DTRP102
DGLU103
DARG112
DILE115
DVAL154
DASN155
DARG157
DASP161
DILE163

Functional Information from PROSITE/UniProt
site_idPS00813
Number of Residues24
DetailsIF4E Eukaryotic initiation factor 4E signature. DYslFKdgIePmWEDeknkrGGRW
ChainResidueDetails
AASP90-TRP113

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:10394359, ECO:0000269|PubMed:9200613
ChainResidueDetails
ATRP56
CTRP102
CARG157
CTHR205
DTRP56
DTRP102
DARG157
DTHR205
ATRP102
AARG157
ATHR205
BTRP56
BTRP102
BARG157
BTHR205
CTRP56

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: Phosphoserine; by PKC and MKNK2 => ECO:0000269|PubMed:17689282
ChainResidueDetails
ASER209
BSER209
CSER209
DSER209

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PDB entries from 2024-07-10

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