6TYF
Crystal structure of MTB sigma L transcription initiation complex with 6 nt long RNA primer
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
A | 0003677 | molecular_function | DNA binding |
A | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0005886 | cellular_component | plasma membrane |
A | 0006351 | biological_process | DNA-templated transcription |
A | 0009274 | cellular_component | peptidoglycan-based cell wall |
A | 0016779 | molecular_function | nucleotidyltransferase activity |
A | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
A | 0046983 | molecular_function | protein dimerization activity |
B | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
B | 0003677 | molecular_function | DNA binding |
B | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0005886 | cellular_component | plasma membrane |
B | 0006351 | biological_process | DNA-templated transcription |
B | 0009274 | cellular_component | peptidoglycan-based cell wall |
B | 0016779 | molecular_function | nucleotidyltransferase activity |
B | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
B | 0046983 | molecular_function | protein dimerization activity |
C | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
C | 0003677 | molecular_function | DNA binding |
C | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005829 | cellular_component | cytosol |
C | 0005886 | cellular_component | plasma membrane |
C | 0006351 | biological_process | DNA-templated transcription |
C | 0009274 | cellular_component | peptidoglycan-based cell wall |
C | 0016779 | molecular_function | nucleotidyltransferase activity |
C | 0032549 | molecular_function | ribonucleoside binding |
C | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
C | 0046677 | biological_process | response to antibiotic |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
D | 0003677 | molecular_function | DNA binding |
D | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
D | 0005829 | cellular_component | cytosol |
D | 0005886 | cellular_component | plasma membrane |
D | 0006351 | biological_process | DNA-templated transcription |
D | 0008270 | molecular_function | zinc ion binding |
D | 0009274 | cellular_component | peptidoglycan-based cell wall |
D | 0016779 | molecular_function | nucleotidyltransferase activity |
D | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
D | 0046872 | molecular_function | metal ion binding |
E | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
E | 0003677 | molecular_function | DNA binding |
E | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
E | 0005829 | cellular_component | cytosol |
E | 0006351 | biological_process | DNA-templated transcription |
E | 0009274 | cellular_component | peptidoglycan-based cell wall |
E | 0016779 | molecular_function | nucleotidyltransferase activity |
E | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
F | 0003677 | molecular_function | DNA binding |
F | 0003700 | molecular_function | DNA-binding transcription factor activity |
F | 0005515 | molecular_function | protein binding |
F | 0006352 | biological_process | DNA-templated transcription initiation |
F | 0006355 | biological_process | regulation of DNA-templated transcription |
F | 0016987 | molecular_function | sigma factor activity |
F | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 19 |
Details | DNA_BIND: H-T-H motif => ECO:0000255 |
Chain | Residue | Details |
F | THR141-HIS160 | |
D | CYS975 | |
D | CYS978 | |
D | CYS62 | |
D | CYS75 | |
D | CYS78 | |
D | ASP535 | |
D | ASP537 | |
D | ASP539 | |
D | CYS891 | |
D | CYS968 |