6TMG
Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase dimer, membrane region model
This is a non-PDB format compatible entry.
Functional Information from GO Data
Chain | GOid | namespace | contents |
a | 0000276 | cellular_component | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) |
a | 0015078 | molecular_function | proton transmembrane transporter activity |
a | 0015986 | biological_process | proton motive force-driven ATP synthesis |
A | 0000276 | cellular_component | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) |
A | 0015078 | molecular_function | proton transmembrane transporter activity |
A | 0015986 | biological_process | proton motive force-driven ATP synthesis |
c | 0005743 | cellular_component | mitochondrial inner membrane |
c | 0005750 | cellular_component | mitochondrial respiratory chain complex III |
c | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
c | 0009055 | molecular_function | electron transfer activity |
c | 0020037 | molecular_function | heme binding |
c | 0046872 | molecular_function | metal ion binding |
C | 0005743 | cellular_component | mitochondrial inner membrane |
C | 0005750 | cellular_component | mitochondrial respiratory chain complex III |
C | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
C | 0009055 | molecular_function | electron transfer activity |
C | 0020037 | molecular_function | heme binding |
C | 0046872 | molecular_function | metal ion binding |
j | 0016020 | cellular_component | membrane |
J | 0016020 | cellular_component | membrane |
k | 0016020 | cellular_component | membrane |
K | 0016020 | cellular_component | membrane |
u | 0016020 | cellular_component | membrane |
U | 0016020 | cellular_component | membrane |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 17 |
Details | binding site for residue PC1 o 201 |
Chain | Residue |
a | LEU215 |
o | SER39 |
o | GLN40 |
o | THR43 |
o | CDL203 |
w | LEU91 |
w | THR95 |
w | ARG96 |
w | PRO99 |
a | ALA217 |
a | MET219 |
d | TYR62 |
h | CDL302 |
j | PHE105 |
j | PEE301 |
j | PEE302 |
o | SER35 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue LMT o 202 |
Chain | Residue |
o | PHE60 |
o | THR64 |
o | ASP99 |
o | ASP100 |
x | TRP30 |
site_id | AC3 |
Number of Residues | 19 |
Details | binding site for residue CDL o 203 |
Chain | Residue |
c | PRO74 |
c | CDL404 |
d | TYR71 |
d | PHE75 |
f | TYR248 |
h | CDL302 |
j | PHE90 |
j | PEE302 |
o | PHE24 |
o | ARG28 |
o | ARG31 |
o | LEU32 |
o | SER35 |
o | VAL48 |
o | PC1201 |
o | PC1204 |
w | THR95 |
w | ARG96 |
x | TRP25 |
site_id | AC4 |
Number of Residues | 13 |
Details | binding site for residue PC1 o 204 |
Chain | Residue |
d | MET79 |
d | TYR82 |
d | PHE87 |
f | PRO243 |
f | SER247 |
h | CDL302 |
j | PEE302 |
o | ARG15 |
o | VAL17 |
o | GLY20 |
o | MET21 |
o | CDL203 |
s | PHE58 |
site_id | AC5 |
Number of Residues | 15 |
Details | binding site for residue PEE j 301 |
Chain | Residue |
d | LMT403 |
h | TYR230 |
h | CDL302 |
j | PHE105 |
j | TRP108 |
j | SER109 |
j | ARG110 |
j | PEE302 |
k | THR160 |
k | PHE220 |
o | PC1201 |
w | PHE85 |
w | VAL86 |
w | MET88 |
x | THR13 |
site_id | AC6 |
Number of Residues | 14 |
Details | binding site for residue PEE j 302 |
Chain | Residue |
c | LMT403 |
c | CDL404 |
h | CDL302 |
j | TRP80 |
j | PHE89 |
j | PHE104 |
j | TRP107 |
j | TRP108 |
j | SER109 |
j | ASP113 |
j | PEE301 |
o | PC1201 |
o | CDL203 |
o | PC1204 |
site_id | AC7 |
Number of Residues | 13 |
Details | binding site for residue CDL u 201 |
Chain | Residue |
c | PHE139 |
c | PHE144 |
c | ARG147 |
c | LMT401 |
c | PEE402 |
c | LMT403 |
e | TRP196 |
h | LMT301 |
s | PHE62 |
s | TRP63 |
u | TYR57 |
u | TYR60 |
u | ARG64 |
site_id | AC8 |
Number of Residues | 10 |
Details | binding site for residue LMT h 301 |
Chain | Residue |
h | ALA224 |
h | ARG225 |
s | GLN65 |
s | THR69 |
u | MET63 |
u | CDL201 |
x | LMT101 |
c | LMT403 |
h | ARG222 |
h | ARG223 |
site_id | AC9 |
Number of Residues | 17 |
Details | binding site for residue CDL h 302 |
Chain | Residue |
c | LMT403 |
h | ARG225 |
h | LYS228 |
h | ILE231 |
j | TRP108 |
j | ARG110 |
j | PEE301 |
j | PEE302 |
o | PHE24 |
o | PC1201 |
o | CDL203 |
o | PC1204 |
s | SER60 |
s | PRO61 |
x | TRP25 |
x | ASN28 |
x | LMT101 |
site_id | AD1 |
Number of Residues | 19 |
Details | binding site for residue CDL e 401 |
Chain | Residue |
B | CDL601 |
b | CYS254 |
b | LEU256 |
b | GLY257 |
b | VAL258 |
b | PHE260 |
c | PEE402 |
e | PHE186 |
e | SER189 |
e | LEU190 |
n | GLU158 |
n | SER159 |
n | LEU160 |
v | ILE9 |
v | ILE16 |
v | ILE82 |
v | ARG86 |
v | LYS90 |
v | CDL201 |
site_id | AD2 |
Number of Residues | 9 |
Details | binding site for residue LMT x 101 |
Chain | Residue |
h | ARG222 |
h | ARG223 |
h | LMT301 |
h | CDL302 |
s | GLN65 |
s | LYS68 |
x | ASN28 |
x | GLU32 |
x | SER53 |
site_id | AD3 |
Number of Residues | 7 |
Details | binding site for residue CDL b 601 |
Chain | Residue |
K | LEU193 |
K | PHE196 |
b | ASN246 |
b | LEU247 |
b | VAL248 |
b | SER249 |
v | ASN17 |
site_id | AD4 |
Number of Residues | 13 |
Details | binding site for residue CDL v 201 |
Chain | Residue |
d | CDL402 |
e | ARG181 |
e | THR182 |
e | TYR183 |
e | LEU184 |
e | PRO185 |
e | PHE186 |
e | CDL401 |
v | TRP79 |
v | TYR83 |
v | MET84 |
v | LYS87 |
w | PRO72 |
site_id | AD5 |
Number of Residues | 10 |
Details | binding site for residue PC1 v 202 |
Chain | Residue |
b | TRP271 |
b | THR276 |
d | THR272 |
d | CDL402 |
e | SER179 |
k | SER212 |
v | TYR73 |
v | TYR76 |
v | LYS77 |
v | HIS80 |
site_id | AD6 |
Number of Residues | 8 |
Details | binding site for residue LMT c 401 |
Chain | Residue |
c | PHE144 |
c | TYR145 |
c | ARG147 |
c | LMT403 |
j | PRO115 |
j | PRO116 |
j | LYS117 |
u | CDL201 |
site_id | AD7 |
Number of Residues | 7 |
Details | binding site for residue PEE c 402 |
Chain | Residue |
c | TYR143 |
c | ARG147 |
d | PHE123 |
e | TRP187 |
e | CDL401 |
u | TYR57 |
u | CDL201 |
site_id | AD8 |
Number of Residues | 10 |
Details | binding site for residue LMT c 403 |
Chain | Residue |
c | TYR145 |
c | LMT401 |
c | CDL404 |
h | ARG225 |
h | LMT301 |
h | CDL302 |
j | PEE302 |
s | PHE58 |
s | GLN65 |
u | CDL201 |
site_id | AD9 |
Number of Residues | 15 |
Details | binding site for residue CDL c 404 |
Chain | Residue |
c | PHE122 |
c | GLN125 |
c | SER126 |
c | VAL129 |
c | TYR130 |
c | LMT403 |
d | LYS95 |
j | PRO74 |
j | VAL75 |
j | TRP76 |
j | PHE90 |
j | PHE104 |
j | PEE302 |
o | CDL203 |
w | PHE69 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue LMT d 401 |
Chain | Residue |
d | LEU269 |
d | SER277 |
d | ASN291 |
k | GLU176 |
site_id | AE2 |
Number of Residues | 11 |
Details | binding site for residue CDL d 402 |
Chain | Residue |
d | GLY270 |
d | PHE271 |
d | THR272 |
e | SER179 |
e | ARG181 |
m | TYR134 |
m | SER137 |
m | ILE138 |
v | TYR76 |
v | CDL201 |
v | PC1202 |
site_id | AE3 |
Number of Residues | 8 |
Details | binding site for residue LMT d 403 |
Chain | Residue |
d | ASP259 |
d | TYR264 |
j | ARG122 |
j | PEE301 |
m | ASN120 |
m | ALA121 |
m | TYR124 |
m | CYS125 |
site_id | AE4 |
Number of Residues | 13 |
Details | binding site for residue PC1 O 201 |
Chain | Residue |
A | LEU215 |
H | CDL302 |
J | PHE105 |
J | PEE301 |
J | PEE302 |
O | SER35 |
O | SER39 |
O | GLN40 |
O | THR43 |
O | CDL203 |
W | LEU91 |
W | THR95 |
W | ARG96 |
site_id | AE5 |
Number of Residues | 5 |
Details | binding site for residue LMT O 202 |
Chain | Residue |
O | PHE60 |
O | THR64 |
O | ASP99 |
O | ASP100 |
X | TRP30 |
site_id | AE6 |
Number of Residues | 16 |
Details | binding site for residue CDL O 203 |
Chain | Residue |
C | PRO74 |
C | CDL404 |
D | TYR71 |
D | PHE75 |
F | TYR248 |
H | CDL302 |
J | PEE302 |
O | PHE24 |
O | ARG28 |
O | ARG31 |
O | LEU32 |
O | SER35 |
O | PC1201 |
O | PC1204 |
W | ARG96 |
X | TRP25 |
site_id | AE7 |
Number of Residues | 18 |
Details | binding site for residue PEE J 301 |
Chain | Residue |
D | LMT403 |
H | ARG225 |
H | TYR230 |
H | CDL302 |
J | PHE102 |
J | PHE105 |
J | TRP108 |
J | SER109 |
J | ARG110 |
J | PEE302 |
K | THR160 |
K | PHE220 |
O | PC1201 |
W | PHE85 |
W | VAL86 |
W | PHE87 |
W | MET88 |
X | THR13 |
site_id | AE8 |
Number of Residues | 15 |
Details | binding site for residue PEE J 302 |
Chain | Residue |
C | LMT403 |
C | CDL404 |
D | PHE87 |
H | ARG225 |
H | CDL302 |
J | PHE104 |
J | TRP107 |
J | TRP108 |
J | SER109 |
J | ASP113 |
J | PEE301 |
O | PC1201 |
O | CDL203 |
O | PC1204 |
X | TRP25 |
site_id | AE9 |
Number of Residues | 16 |
Details | binding site for residue CDL U 201 |
Chain | Residue |
C | PHE139 |
C | PHE144 |
C | ARG147 |
C | LMT401 |
C | PEE402 |
C | LMT403 |
D | PHE123 |
E | TRP196 |
H | LMT301 |
S | PHE62 |
S | TRP63 |
U | ALA53 |
U | TYR57 |
U | TYR60 |
U | ARG61 |
U | ARG64 |
site_id | AF1 |
Number of Residues | 12 |
Details | binding site for residue LMT H 301 |
Chain | Residue |
C | LMT403 |
H | ARG222 |
H | ARG223 |
H | ALA224 |
H | ARG225 |
S | GLN65 |
S | THR69 |
U | TYR60 |
U | MET63 |
U | GLU71 |
U | CDL201 |
X | LMT101 |
site_id | AF2 |
Number of Residues | 16 |
Details | binding site for residue CDL H 302 |
Chain | Residue |
C | LMT403 |
H | ARG225 |
H | LYS228 |
H | ILE231 |
J | TRP108 |
J | ARG110 |
J | PEE301 |
J | PEE302 |
O | PHE24 |
O | PC1201 |
O | CDL203 |
O | PC1204 |
S | PRO61 |
S | GLN65 |
X | ASN28 |
X | LMT101 |
site_id | AF3 |
Number of Residues | 20 |
Details | binding site for residue CDL E 401 |
Chain | Residue |
B | CYS254 |
B | LEU256 |
B | GLY257 |
B | VAL258 |
B | PHE260 |
C | PEE402 |
E | PHE186 |
E | SER189 |
E | LEU190 |
N | GLU158 |
N | SER159 |
N | LEU160 |
V | ILE9 |
V | THR75 |
V | ALA78 |
V | ILE82 |
V | ARG86 |
V | LYS90 |
V | CDL201 |
V | CDL202 |
site_id | AF4 |
Number of Residues | 9 |
Details | binding site for residue LMT X 101 |
Chain | Residue |
H | ARG222 |
H | ARG223 |
H | LMT301 |
H | CDL302 |
S | GLN65 |
S | LYS68 |
X | ASN28 |
X | GLU32 |
X | SER53 |
site_id | AF5 |
Number of Residues | 24 |
Details | binding site for residue CDL B 601 |
Chain | Residue |
B | TYR99 |
B | LYS101 |
B | PHE272 |
B | THR276 |
B | PHE277 |
B | GLY280 |
B | ALA281 |
B | TYR284 |
V | TRP61 |
V | TRP62 |
V | GLN63 |
V | LEU70 |
V | TYR73 |
V | CDL201 |
b | ARG103 |
b | CYS254 |
b | LEU262 |
e | CDL401 |
v | HIS4 |
v | PHE5 |
v | GLN6 |
v | TRP61 |
v | GLY74 |
v | MET81 |
site_id | AF6 |
Number of Residues | 11 |
Details | binding site for residue CDL B 602 |
Chain | Residue |
B | ASN246 |
B | LEU247 |
B | VAL248 |
B | SER249 |
V | ASN17 |
V | THR22 |
V | ARG23 |
k | PHE190 |
k | PHE192 |
k | LEU193 |
k | PHE196 |
site_id | AF7 |
Number of Residues | 23 |
Details | binding site for residue CDL V 201 |
Chain | Residue |
B | ARG103 |
B | CYS254 |
B | LEU262 |
B | CDL601 |
E | CDL401 |
V | HIS4 |
V | PHE5 |
V | GLN6 |
V | TRP61 |
V | VAL71 |
V | GLY74 |
V | THR75 |
V | LYS77 |
V | MET81 |
b | TYR99 |
b | LYS101 |
b | PHE272 |
b | THR276 |
b | ALA281 |
b | TYR284 |
v | TRP62 |
v | LEU70 |
v | TYR73 |
site_id | AF8 |
Number of Residues | 14 |
Details | binding site for residue CDL V 202 |
Chain | Residue |
D | CDL402 |
E | ARG181 |
E | THR182 |
E | TYR183 |
E | LEU184 |
E | PRO185 |
E | PHE186 |
E | CDL401 |
M | MET140 |
V | TRP79 |
V | TYR83 |
V | MET84 |
V | LYS87 |
W | PRO72 |
site_id | AF9 |
Number of Residues | 11 |
Details | binding site for residue PC1 V 203 |
Chain | Residue |
B | TRP271 |
B | THR276 |
D | THR272 |
D | CDL402 |
E | SER179 |
K | SER212 |
V | TYR73 |
V | TYR76 |
V | LYS77 |
V | HIS80 |
W | PHE85 |
site_id | AG1 |
Number of Residues | 9 |
Details | binding site for residue LMT C 401 |
Chain | Residue |
C | PHE144 |
C | TYR145 |
C | ARG147 |
C | LMT403 |
J | PRO115 |
J | PRO116 |
J | LYS117 |
J | LEU120 |
U | CDL201 |
site_id | AG2 |
Number of Residues | 7 |
Details | binding site for residue PEE C 402 |
Chain | Residue |
C | TYR143 |
C | ARG147 |
D | PHE123 |
E | TRP187 |
E | CDL401 |
U | TYR57 |
U | CDL201 |
site_id | AG3 |
Number of Residues | 9 |
Details | binding site for residue LMT C 403 |
Chain | Residue |
C | TYR145 |
C | LMT401 |
C | CDL404 |
H | ARG225 |
H | LMT301 |
H | CDL302 |
J | PEE302 |
S | GLN65 |
U | CDL201 |
site_id | AG4 |
Number of Residues | 15 |
Details | binding site for residue CDL C 404 |
Chain | Residue |
C | PHE122 |
C | GLN125 |
C | SER126 |
C | VAL129 |
C | TYR130 |
C | LMT403 |
D | LYS95 |
J | PRO74 |
J | VAL75 |
J | TRP76 |
J | PHE90 |
J | PHE104 |
J | PEE302 |
O | CDL203 |
W | PHE69 |
site_id | AG5 |
Number of Residues | 4 |
Details | binding site for residue LMT D 401 |
Chain | Residue |
D | LEU269 |
D | SER277 |
D | ASN291 |
K | GLU176 |
site_id | AG6 |
Number of Residues | 11 |
Details | binding site for residue CDL D 402 |
Chain | Residue |
D | GLY270 |
D | PHE271 |
D | THR272 |
E | SER179 |
E | ARG181 |
M | TYR134 |
M | SER137 |
M | ILE138 |
M | LEU148 |
V | CDL202 |
V | PC1203 |
site_id | AG7 |
Number of Residues | 7 |
Details | binding site for residue LMT D 403 |
Chain | Residue |
D | TYR264 |
J | ARG122 |
J | PEE301 |
M | ASN120 |
M | ALA121 |
M | TYR124 |
M | CYS125 |
site_id | AG8 |
Number of Residues | 18 |
Details | binding site for Di-peptide PC1 O 204 and ARG O 15 |
Chain | Residue |
D | TYR82 |
D | PHE87 |
H | CDL302 |
J | PEE302 |
O | VAL12 |
O | LYS13 |
O | GLY14 |
O | SER16 |
O | VAL17 |
O | ALA19 |
O | GLY20 |
O | MET21 |
O | SER23 |
O | CDL203 |
S | ASP40 |
S | SER41 |
S | TRP45 |
S | PHE58 |