6TI1
SHMT from Streptococcus thermophilus Tyr55Ser variant in complex with PLP/L-Threonine/Lys230 gem diamine complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004372 | molecular_function | glycine hydroxymethyltransferase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006545 | biological_process | glycine biosynthetic process |
A | 0006565 | biological_process | L-serine catabolic process |
A | 0006730 | biological_process | one-carbon metabolic process |
A | 0008270 | molecular_function | zinc ion binding |
A | 0008652 | biological_process | amino acid biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0019264 | biological_process | glycine biosynthetic process from serine |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0035999 | biological_process | tetrahydrofolate interconversion |
A | 0046653 | biological_process | tetrahydrofolate metabolic process |
A | 0046655 | biological_process | folic acid metabolic process |
A | 0050897 | molecular_function | cobalt ion binding |
A | 0070905 | molecular_function | serine binding |
C | 0003824 | molecular_function | catalytic activity |
C | 0004372 | molecular_function | glycine hydroxymethyltransferase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006545 | biological_process | glycine biosynthetic process |
C | 0006565 | biological_process | L-serine catabolic process |
C | 0006730 | biological_process | one-carbon metabolic process |
C | 0008270 | molecular_function | zinc ion binding |
C | 0008652 | biological_process | amino acid biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0019264 | biological_process | glycine biosynthetic process from serine |
C | 0030170 | molecular_function | pyridoxal phosphate binding |
C | 0035999 | biological_process | tetrahydrofolate interconversion |
C | 0046653 | biological_process | tetrahydrofolate metabolic process |
C | 0046655 | biological_process | folic acid metabolic process |
C | 0050897 | molecular_function | cobalt ion binding |
C | 0070905 | molecular_function | serine binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue GOL A 501 |
Chain | Residue |
A | TYR156 |
A | ARG180 |
A | ASP183 |
A | HOH645 |
A | HOH645 |
A | HOH653 |
A | HOH664 |
site_id | AC2 |
Number of Residues | 23 |
Details | binding site for residue 2BO A 502 |
Chain | Residue |
A | GLY98 |
A | SER99 |
A | HIS126 |
A | SER176 |
A | ASP201 |
A | ALA203 |
A | HIS204 |
A | HIS229 |
A | LYS230 |
A | ARG363 |
A | HOH666 |
A | HOH682 |
A | HOH721 |
A | HOH760 |
C | SER55 |
C | GLU57 |
C | TYR65 |
C | GLY261 |
C | GLY262 |
C | HOH676 |
C | HOH708 |
A | SER35 |
A | SER97 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue NA A 503 |
Chain | Residue |
A | ALA203 |
A | ALA206 |
A | HIS229 |
A | LYS230 |
A | THR231 |
A | LEU232 |
site_id | AC4 |
Number of Residues | 23 |
Details | binding site for Di-peptide 2BO C 501 and LYS C 230 |
Chain | Residue |
A | GLU57 |
A | TYR65 |
A | GLY261 |
A | GLY262 |
C | SER35 |
C | ASN37 |
C | SER97 |
C | GLY98 |
C | SER99 |
C | HIS126 |
C | SER176 |
C | ASP201 |
C | ALA203 |
C | HIS204 |
C | HIS229 |
C | THR231 |
C | LEU232 |
C | ARG233 |
C | ARG363 |
C | HOH650 |
C | HOH652 |
C | HOH674 |
C | HOH714 |
Functional Information from PROSITE/UniProt
site_id | PS00096 |
Number of Residues | 17 |
Details | SHMT Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. HVtTTTTHKTLrGPRGG |
Chain | Residue | Details |
A | HIS222-GLY238 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00051 |
Chain | Residue | Details |
A | SER355 | |
C | LEU121 | |
C | GLY125 | |
C | SER355 | |
A | LEU121 | |
A | GLY125 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | SITE: Plays an important role in substrate specificity => ECO:0000255|HAMAP-Rule:MF_00051 |
Chain | Residue | Details |
A | HIS229 | |
C | HIS229 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255|HAMAP-Rule:MF_00051 |
Chain | Residue | Details |
A | LYS230 | |
C | LYS230 |