6T12
Crystal structure of YTHDC1 with fragment 30 (DHU_DC1_220)
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue M78 A 601 |
Chain | Residue |
A | ASN367 |
A | SER378 |
A | LEU380 |
A | TRP428 |
A | VAL429 |
A | PRO431 |
A | MET434 |
A | LEU439 |
A | HOH850 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 602 |
Chain | Residue |
A | GLY344 |
A | SER346 |
A | LYS347 |
A | HOH709 |
A | HOH720 |
A | HOH805 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 603 |
Chain | Residue |
A | ARG404 |
A | ARG475 |
A | ASP476 |
A | HOH822 |
site_id | AC4 |
Number of Residues | 10 |
Details | binding site for residue M78 B 601 |
Chain | Residue |
B | ASN367 |
B | SER378 |
B | LEU380 |
B | TRP428 |
B | VAL429 |
B | MET434 |
B | LEU439 |
B | HOH715 |
B | HOH776 |
B | HOH808 |
site_id | AC5 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 602 |
Chain | Residue |
B | ARG451 |
B | GLU452 |
B | HOH736 |
B | HOH743 |
B | HOH747 |
B | HOH754 |
B | HOH765 |
site_id | AC6 |
Number of Residues | 9 |
Details | binding site for residue SO4 B 603 |
Chain | Residue |
B | ARG404 |
B | ARG475 |
B | ASP476 |
B | HOH719 |
B | HOH739 |
B | HOH759 |
B | HOH839 |
B | HOH867 |
B | HOH871 |
site_id | AC7 |
Number of Residues | 10 |
Details | binding site for residue SO4 B 604 |
Chain | Residue |
A | TRP465 |
A | GLN478 |
A | GLU479 |
B | GLY344 |
B | LYS347 |
B | HOH701 |
B | HOH717 |
B | HOH756 |
B | HOH841 |
B | HOH866 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 605 |
Chain | Residue |
B | SER419 |
B | HIS420 |
B | HIS421 |
B | ARG451 |
B | HOH789 |
B | HOH823 |
B | HOH836 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
Chain | Residue | Details |
A | LYS361 | |
A | ASP476 | |
B | LYS361 | |
B | ASP476 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
Chain | Residue | Details |
A | TRP377 | |
B | TRP377 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25242552 |
Chain | Residue | Details |
A | TRP428 | |
B | TRP428 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER424 | |
B | SER424 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231 |
Chain | Residue | Details |
A | SER435 | |
B | SER435 |