Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6T02

Crystal structure of YTHDC1 with fragment 15 (DHU_DC1_169)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue M5E A 601
ChainResidue
ASER378
ATHR379
ALEU380
ATRP428
ASO4603
AHOH789

site_idAC2
Number of Residues7
Detailsbinding site for residue M5E A 602
ChainResidue
AHOH730
BTYR350
BHIS427
BTRP428
APRO464
ATRP465
AHOH720

site_idAC3
Number of Residues7
Detailsbinding site for residue SO4 A 603
ChainResidue
ASER362
AASN363
AASN367
ATRP377
AM5E601
AHOH705
AHOH725

site_idAC4
Number of Residues7
Detailsbinding site for residue SO4 A 604
ChainResidue
AGLY344
ATHR345
ASER346
ALYS347
AHOH718
AHOH735
AHOH811

site_idAC5
Number of Residues10
Detailsbinding site for residue SO4 A 605
ChainResidue
ALYS386
ATRP465
AGLN478
AGLU479
AHOH762
AHOH770
AHOH784
BGLY344
BLYS347
BHOH877

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 606
ChainResidue
ASER417
AGLU418
AHIS420

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 A 607
ChainResidue
AHIS420
AHIS421
AHOH727

site_idAC8
Number of Residues8
Detailsbinding site for residue M5E B 601
ChainResidue
BTRP377
BSER378
BTHR379
BLEU380
BTRP428
BMET434
BSO4602
BHOH763

site_idAC9
Number of Residues9
Detailsbinding site for residue SO4 B 602
ChainResidue
BSER362
BASN363
BASN364
BASN367
BTRP377
BM5E601
BHOH725
BHOH726
BHOH735

site_idAD1
Number of Residues7
Detailsbinding site for residue SO4 B 603
ChainResidue
BARG451
BGLU452
BHOH742
BHOH754
BHOH769
BHOH792
BHOH795

site_idAD2
Number of Residues9
Detailsbinding site for residue SO4 B 604
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BPRO493
BHOH718
BHOH825
BHOH828
BHOH842

site_idAD3
Number of Residues5
Detailsbinding site for residue SO4 B 605
ChainResidue
BARG404
BARG475
BASP476
BHOH766
BHOH834

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 B 606
ChainResidue
BPRO454
BLYS457
BHOH706
BHOH711
BHOH816
BHOH832

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ALYS361
AASP476
BLYS361
BASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon