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6T02

Crystal structure of YTHDC1 with fragment 15 (DHU_DC1_169)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-17
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths39.647, 103.260, 42.431
Unit cell angles90.00, 104.93, 90.00
Refinement procedure
Resolution41.000 - 1.100
R-factor0.1876
Rwork0.187
R-free0.20030
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4r3h
RMSD bond length0.004
RMSD bond angle0.830
Data reduction softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]41.0001.170
High resolution limit [Å]1.1001.100
Number of reflections13103320349
<I/σ(I)>13.73
Completeness [%]98.7
Redundancy3.2
CC(1/2)1.0000.534
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29525% PEG3350, 0.2M Ammonium Sulphate, 0.1M bis-tris, pH 6.5

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PDB entries from 2024-07-17

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