6T01
Crystal structure of YTHDC1 with fragment 13 (DHU_DC1_153)
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 15 |
Details | binding site for residue M4B A 601 |
Chain | Residue |
A | ASN367 |
A | MET434 |
A | ASP476 |
A | HOH747 |
A | HOH790 |
A | HOH798 |
A | HOH830 |
A | TRP377 |
A | SER378 |
A | THR379 |
A | LEU380 |
A | TRP428 |
A | VAL429 |
A | LEU430 |
A | PRO431 |
site_id | AC2 |
Number of Residues | 9 |
Details | binding site for residue SO4 A 602 |
Chain | Residue |
A | GLN478 |
A | GLU479 |
A | HOH706 |
A | HOH711 |
A | HOH784 |
A | HOH805 |
B | GLY344 |
B | LYS347 |
B | HOH842 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 603 |
Chain | Residue |
A | GLY344 |
A | SER346 |
A | LYS347 |
A | HOH705 |
A | HOH762 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 604 |
Chain | Residue |
A | HIS420 |
A | HIS421 |
A | HOH774 |
A | HOH799 |
A | HOH854 |
site_id | AC5 |
Number of Residues | 14 |
Details | binding site for residue M4B B 601 |
Chain | Residue |
B | ASN367 |
B | TRP377 |
B | SER378 |
B | THR379 |
B | LEU380 |
B | TRP428 |
B | VAL429 |
B | LEU430 |
B | PRO431 |
B | MET434 |
B | ASP476 |
B | HOH735 |
B | HOH760 |
B | HOH812 |
site_id | AC6 |
Number of Residues | 9 |
Details | binding site for residue SO4 B 602 |
Chain | Residue |
B | ARG451 |
B | GLU452 |
B | HOH712 |
B | HOH730 |
B | HOH755 |
B | HOH766 |
B | HOH767 |
B | HOH799 |
B | HOH803 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue SO4 B 603 |
Chain | Residue |
B | HIS420 |
B | HIS421 |
B | ARG451 |
B | HOH726 |
B | HOH784 |
B | HOH864 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue SO4 B 604 |
Chain | Residue |
B | ARG404 |
B | ARG475 |
B | ASP476 |
B | HOH709 |
B | HOH743 |
B | HOH804 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
Chain | Residue | Details |
A | LYS361 | |
A | ASP476 | |
B | LYS361 | |
B | ASP476 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
Chain | Residue | Details |
A | TRP377 | |
B | TRP377 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25242552 |
Chain | Residue | Details |
A | TRP428 | |
B | TRP428 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER424 | |
B | SER424 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231 |
Chain | Residue | Details |
A | SER435 | |
B | SER435 |