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6SZ1

Crystal structure of YTHDC1 with fragment 2 (DHU_DC1_140)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue M0W A 601
ChainResidue
ALYS361
ASER362
AASN363
AASN367
ATRP377
ASER378
ATRP428
AASP476

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 602
ChainResidue
APRO431
AALA432
AHOH701
BHIS505
AASN363

site_idAC3
Number of Residues10
Detailsbinding site for residue M0W B 601
ChainResidue
BLYS361
BSER362
BASN363
BASN367
BTRP377
BSER378
BTRP428
BPRO431
BMET434
BASP476

site_idAC4
Number of Residues7
Detailsbinding site for residue SO4 B 602
ChainResidue
BARG451
BGLU452
BHOH707
BHOH748
BHOH752
BHOH754
BHOH793

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 B 603
ChainResidue
BLYS386
BGLU479

site_idAC6
Number of Residues5
Detailsbinding site for residue SO4 B 604
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BHOH744

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 B 605
ChainResidue
BLYS385
BASN388
BARG392
BLYS457
BHOH788

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
BLYS361
BASP476
AASP476
ALYS361

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

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PDB entries from 2024-06-12

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