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6SXO

Cryo-EM structure of the human Ebp1-ribosome complex

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003714molecular_functiontranscription corepressor activity
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005634cellular_componentnucleus
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0006417biological_processregulation of translation
A0016020cellular_componentmembrane
A0031625molecular_functionubiquitin protein ligase binding
A0035578cellular_componentazurophil granule lumen
A0043066biological_processnegative regulation of apoptotic process
A0045597biological_processpositive regulation of cell differentiation
A0045892biological_processnegative regulation of DNA-templated transcription
A0070062cellular_componentextracellular exosome
A1990904cellular_componentribonucleoprotein complex
LR0002181biological_processcytoplasmic translation
LR0003723molecular_functionRNA binding
LR0003735molecular_functionstructural constituent of ribosome
LR0005515molecular_functionprotein binding
LR0005730cellular_componentnucleolus
LR0005737cellular_componentcytoplasm
LR0005829cellular_componentcytosol
LR0005840cellular_componentribosome
LR0005925cellular_componentfocal adhesion
LR0006412biological_processtranslation
LR0016020cellular_componentmembrane
LR0022625cellular_componentcytosolic large ribosomal subunit
LR0022626cellular_componentcytosolic ribosome
LR0045202cellular_componentsynapse
LR1990904cellular_componentribonucleoprotein complex
LX0002181biological_processcytoplasmic translation
LX0003723molecular_functionRNA binding
LX0003735molecular_functionstructural constituent of ribosome
LX0005515molecular_functionprotein binding
LX0005634cellular_componentnucleus
LX0005730cellular_componentnucleolus
LX0005737cellular_componentcytoplasm
LX0005829cellular_componentcytosol
LX0005840cellular_componentribosome
LX0006412biological_processtranslation
LX0019843molecular_functionrRNA binding
LX0022625cellular_componentcytosolic large ribosomal subunit
LX0022626cellular_componentcytosolic ribosome
LX0045296molecular_functioncadherin binding
LX0070062cellular_componentextracellular exosome
LX1904841molecular_functionTORC2 complex binding
LX1990904cellular_componentribonucleoprotein complex
LY0002181biological_processcytoplasmic translation
LY0003723molecular_functionRNA binding
LY0003735molecular_functionstructural constituent of ribosome
LY0005515molecular_functionprotein binding
LY0005654cellular_componentnucleoplasm
LY0005730cellular_componentnucleolus
LY0005737cellular_componentcytoplasm
LY0005829cellular_componentcytosol
LY0005840cellular_componentribosome
LY0006364biological_processrRNA processing
LY0006412biological_processtranslation
LY0006977biological_processDNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
LY0015934cellular_componentlarge ribosomal subunit
LY0016020cellular_componentmembrane
LY0022625cellular_componentcytosolic large ribosomal subunit
LY0022626cellular_componentcytosolic ribosome
LY0034644biological_processcellular response to UV
LY0042273biological_processribosomal large subunit biogenesis
LY0045202cellular_componentsynapse
LY0045727biological_processpositive regulation of translation
LY0048027molecular_functionmRNA 5'-UTR binding
LY0070062cellular_componentextracellular exosome
LY0071479biological_processcellular response to ionizing radiation
LY0071480biological_processcellular response to gamma radiation
LY1902164biological_processpositive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
LY1902167biological_processpositive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
LY1904803biological_processregulation of translation involved in cellular response to UV
LY1990904cellular_componentribonucleoprotein complex
Lh0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Lh0002181biological_processcytoplasmic translation
Lh0003723molecular_functionRNA binding
Lh0003729molecular_functionmRNA binding
Lh0003735molecular_functionstructural constituent of ribosome
Lh0005730cellular_componentnucleolus
Lh0005737cellular_componentcytoplasm
Lh0005829cellular_componentcytosol
Lh0005840cellular_componentribosome
Lh0006412biological_processtranslation
Lh0016020cellular_componentmembrane
Lh0022625cellular_componentcytosolic large ribosomal subunit
Lh0022626cellular_componentcytosolic ribosome
Lh1990904cellular_componentribonucleoprotein complex
Lk0001501biological_processskeletal system development
Lk0001503biological_processossification
Lk0002181biological_processcytoplasmic translation
Lk0003723molecular_functionRNA binding
Lk0003735molecular_functionstructural constituent of ribosome
Lk0005515molecular_functionprotein binding
Lk0005737cellular_componentcytoplasm
Lk0005829cellular_componentcytosol
Lk0005840cellular_componentribosome
Lk0005925cellular_componentfocal adhesion
Lk0006412biological_processtranslation
Lk0006417biological_processregulation of translation
Lk0007605biological_processsensory perception of sound
Lk0014069cellular_componentpostsynaptic density
Lk0022618biological_processprotein-RNA complex assembly
Lk0022625cellular_componentcytosolic large ribosomal subunit
Lk0022626cellular_componentcytosolic ribosome
Lk0033291cellular_componenteukaryotic 80S initiation complex
Lk0034463biological_process90S preribosome assembly
Lk0042474biological_processmiddle ear morphogenesis
Lk0045202cellular_componentsynapse
Lk0048318biological_processaxial mesoderm development
Lk1990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS00526
Number of Residues20
DetailsRIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaSsvlrCGkkkVWLDP
ChainResidueDetails
LRGLN7-PRO26

site_idPS01108
Number of Residues19
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVqVVrGhyKGqqiGkV
ChainResidueDetails
LYASP52-VAL70

site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. KLSKIRvVRKSIARV
ChainResidueDetails
LhLYS43-VAL57

site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLApdydaldV
ChainResidueDetails
LXLYS134-VAL149

site_idPS01202
Number of Residues17
DetailsMAP_2 Methionine aminopeptidase subfamily 2 signature. DLvKIDlGvHVDGfiaN
ChainResidueDetails
AASP104-ASN120

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648
ChainResidueDetails
LYTHR139
LRARG16
LRARG38

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
LYLYS136

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
LXSER43

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:20068231
ChainResidueDetails
LXTHR45
LkLYS9

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P62751
ChainResidueDetails
LXLYS70

site_idSWS_FT_FI6
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
LXLYS14

218853

PDB entries from 2024-04-24

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