6SUY
Yeast cytochrome c in complex with an octa-anionic calix[4]arene
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005758 | cellular_component | mitochondrial intermembrane space |
A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
A | 0009055 | molecular_function | electron transfer activity |
A | 0020037 | molecular_function | heme binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0070469 | cellular_component | respirasome |
A | 1901612 | molecular_function | cardiolipin binding |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005758 | cellular_component | mitochondrial intermembrane space |
B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
B | 0009055 | molecular_function | electron transfer activity |
B | 0020037 | molecular_function | heme binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0070469 | cellular_component | respirasome |
B | 1901612 | molecular_function | cardiolipin binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 22 |
Details | binding site for residue HEC A 201 |
Chain | Residue |
A | ARG13 |
A | TYR48 |
A | THR49 |
A | ASN52 |
A | TRP59 |
A | MET64 |
A | THR78 |
A | LYS79 |
A | MET80 |
A | ALA81 |
A | PHE82 |
A | CYS14 |
A | HOH303 |
A | HOH330 |
B | LVT202 |
A | CYS17 |
A | HIS18 |
A | VAL28 |
A | ILE35 |
A | SER40 |
A | GLY41 |
A | TYR46 |
site_id | AC2 |
Number of Residues | 23 |
Details | binding site for residue LVT A 202 |
Chain | Residue |
A | ARG13 |
A | PHE82 |
A | GLY83 |
A | GLY84 |
A | LEU85 |
A | LYS86 |
A | LYS87 |
A | NA203 |
A | HOH353 |
A | HOH360 |
A | HOH370 |
A | HOH374 |
A | HOH376 |
A | HOH378 |
A | HOH380 |
B | ARG13 |
B | PHE82 |
B | GLY83 |
B | GLY84 |
B | LEU85 |
B | LYS86 |
B | LYS87 |
B | HOH365 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue NA A 203 |
Chain | Residue |
A | LVT202 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 204 |
Chain | Residue |
A | ASN70 |
A | LYS86 |
A | HOH326 |
A | HOH342 |
A | HOH366 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 205 |
Chain | Residue |
A | ARG38 |
A | HIS39 |
A | GLN42 |
A | HOH348 |
A | HOH352 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 206 |
Chain | Residue |
A | THR8 |
A | LYS11 |
A | HOH321 |
B | THR8 |
B | LYS11 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 207 |
Chain | Residue |
A | SER2 |
A | ALA3 |
A | LYS4 |
A | HOH322 |
site_id | AC8 |
Number of Residues | 24 |
Details | binding site for residue LVT B 202 |
Chain | Residue |
A | GLU-4 |
A | GLN16 |
A | VAL28 |
A | ASP60 |
A | ASN62 |
A | ASN63 |
A | GLU66 |
A | TYR74 |
A | HEC201 |
A | HOH331 |
B | LYS87 |
B | GLU88 |
B | LYS89 |
B | NA203 |
B | HOH318 |
B | HOH322 |
B | HOH329 |
B | HOH330 |
B | HOH333 |
B | HOH339 |
B | HOH343 |
B | HOH380 |
B | HOH392 |
B | HOH394 |
site_id | AC9 |
Number of Residues | 1 |
Details | binding site for residue NA B 203 |
Chain | Residue |
B | LVT202 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 204 |
Chain | Residue |
B | THR69 |
B | ASN70 |
B | LYS86 |
B | HOH328 |
site_id | AD2 |
Number of Residues | 25 |
Details | binding site for Di-peptide HEC B 201 and CYS B 17 |
Chain | Residue |
B | LYS27 |
B | VAL28 |
B | GLY29 |
B | ILE35 |
B | SER40 |
B | GLY41 |
B | TYR46 |
B | TYR48 |
B | THR49 |
B | ASN52 |
B | TRP59 |
B | MET64 |
B | TYR67 |
B | THR78 |
B | LYS79 |
B | MET80 |
B | PHE82 |
B | LEU94 |
B | HOH334 |
B | HOH357 |
B | ARG13 |
B | CYS14 |
B | LEU15 |
B | GLN16 |
B | HIS18 |
site_id | AD3 |
Number of Residues | 24 |
Details | binding site for Di-peptide HEC B 201 and CYS B 14 |
Chain | Residue |
B | PHE10 |
B | ARG13 |
B | LEU15 |
B | GLN16 |
B | CYS17 |
B | HIS18 |
B | VAL28 |
B | ILE35 |
B | SER40 |
B | GLY41 |
B | TYR46 |
B | TYR48 |
B | THR49 |
B | ASN52 |
B | TRP59 |
B | MET64 |
B | TYR67 |
B | THR78 |
B | LYS79 |
B | MET80 |
B | PHE82 |
B | LEU94 |
B | HOH334 |
B | HOH357 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: covalent => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | CYS14 | |
A | CYS17 | |
B | CYS14 | |
B | CYS17 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | HIS18 | |
A | MET80 | |
B | HIS18 | |
B | MET80 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine; by CTM1 => ECO:0000269|PubMed:10791961, ECO:0000269|PubMed:11880631, ECO:0007744|PDB:1KYO |
Chain | Residue | Details |
A | LYS72 | |
B | LYS72 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:10821864, ECO:0000269|PubMed:18390544 |
Chain | Residue | Details |
A | LYS73 | |
B | LYS73 |