6SQG

Crystal structure of viral rhodopsin OLPVRII

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005216	molecular_function	monoatomic ion channel activity
A	0006811	biological_process	monoatomic ion transport
A	0016020	cellular_component	membrane
B	0005216	molecular_function	monoatomic ion channel activity
B	0006811	biological_process	monoatomic ion transport
B	0016020	cellular_component	membrane
C	0005216	molecular_function	monoatomic ion channel activity
C	0006811	biological_process	monoatomic ion transport
C	0016020	cellular_component	membrane
D	0005216	molecular_function	monoatomic ion channel activity
D	0006811	biological_process	monoatomic ion transport
D	0016020	cellular_component	membrane
E	0005216	molecular_function	monoatomic ion channel activity
E	0006811	biological_process	monoatomic ion transport
E	0016020	cellular_component	membrane

Functional Information from PDB Data

site_id	AC1
Number of Residues	1
Details	binding site for residue LFA A 301

Chain	Residue
A	MET107

---

site_id	AC2
Number of Residues	2
Details	binding site for residue LFA A 302

Chain	Residue
A	GLY111
A	MET112

---

site_id	AC3
Number of Residues	3
Details	binding site for residue LFA A 303

Chain	Residue
A	GLY20
A	PHE24
A	ALA50

---

site_id	AC4
Number of Residues	2
Details	binding site for residue LFA A 304

Chain	Residue
A	THR21
C	GLY20

---

site_id	AC5
Number of Residues	2
Details	binding site for residue LFA A 306

Chain	Residue
A	LEU190
A	VAL189

---

site_id	AC6
Number of Residues	1
Details	binding site for residue LFA A 307

Chain	Residue
A	PRO182

---

site_id	AC7
Number of Residues	1
Details	binding site for residue LFA A 308

Chain	Residue
A	ILE82

---

site_id	AC8
Number of Residues	5
Details	binding site for residue LFA A 309

Chain	Residue
A	HOH443
B	PHE138
B	GLY142
B	GLY143
B	TYR146

---

site_id	AC9
Number of Residues	2
Details	binding site for residue LFA A 310

Chain	Residue
A	PHE197
C	PHE103

---

site_id	AD1
Number of Residues	6
Details	binding site for residue LFA A 311

Chain	Residue
A	VAL135
A	PHE138
A	ASN149
A	ARG152
A	TYR162
A	LFA317

---

site_id	AD2
Number of Residues	4
Details	binding site for residue LFA A 312

Chain	Residue
A	LEU139
A	GLY143
A	LFA316
B	LFA308

---

site_id	AD3
Number of Residues	2
Details	binding site for residue LFA A 313

Chain	Residue
A	TYR121
E	LFA309

---

site_id	AD4
Number of Residues	3
Details	binding site for residue LFA A 314

Chain	Residue
A	TYR114
E	PHE197
E	LFA309

---

site_id	AD5
Number of Residues	1
Details	binding site for residue LFA A 315

Chain	Residue
A	PHE193

---

site_id	AD6
Number of Residues	2
Details	binding site for residue LFA A 316

Chain	Residue
A	LFA312
B	LFA309

---

site_id	AD7
Number of Residues	2
Details	binding site for residue LFA A 317

Chain	Residue
A	LFA311
D	LFA306

---

site_id	AD8
Number of Residues	11
Details	binding site for residue RET A 318

Chain	Residue
A	TRP76
A	MET83
A	MET116
A	GLY133
A	GLY137
A	TRP169
A	TYR172
A	GLY173
A	TYR176
A	ASP191
A	LYS195

---

site_id	AD9
Number of Residues	2
Details	binding site for residue LFA B 301

Chain	Residue
B	HOH437
C	HOH432

---

site_id	AE1
Number of Residues	1
Details	binding site for residue LFA B 302

Chain	Residue
B	GLY20

---

site_id	AE2
Number of Residues	1
Details	binding site for residue LFA B 305

Chain	Residue
C	LFA308

---

site_id	AE3
Number of Residues	1
Details	binding site for residue LFA B 306

Chain	Residue
C	LEU11

---

site_id	AE4
Number of Residues	2
Details	binding site for residue LFA B 307

Chain	Residue
B	GLY142
B	TYR162

---

site_id	AE5
Number of Residues	5
Details	binding site for residue LFA B 308

Chain	Residue
A	MET132
A	LFA312
B	LEU136
B	PHE140
B	LFA309

---

site_id	AE6
Number of Residues	4
Details	binding site for residue LFA B 309

Chain	Residue
A	LFA316
B	MET112
B	LYS147
B	LFA308

---

site_id	AE7
Number of Residues	1
Details	binding site for residue LFA B 310

Chain	Residue
B	LEU4

---

site_id	AE8
Number of Residues	2
Details	binding site for residue LFA B 311

Chain	Residue
B	LEU181
B	PRO182

---

site_id	AE9
Number of Residues	1
Details	binding site for residue LFA B 312

Chain	Residue
B	MET112

---

site_id	AF1
Number of Residues	1
Details	binding site for residue LFA B 313

Chain	Residue
B	THR119

---

site_id	AF2
Number of Residues	3
Details	binding site for residue LFA B 314

Chain	Residue
B	MET107
B	TYR114
B	LFA315

---

site_id	AF3
Number of Residues	1
Details	binding site for residue LFA B 315

Chain	Residue
B	LFA314

---

site_id	AF4
Number of Residues	9
Details	binding site for residue RET B 316

Chain	Residue
B	TRP76
B	MET83
B	MET116
B	GLY137
B	TRP169
B	TYR172
B	TYR176
B	ASP191
B	LYS195

---

site_id	AF5
Number of Residues	5
Details	binding site for residue LFA C 303

Chain	Residue
C	VAL135
C	PHE138
C	LEU139
C	LFA306
E	LFA303

---

site_id	AF6
Number of Residues	1
Details	binding site for residue LFA C 304

Chain	Residue
C	MET107

---

site_id	AF7
Number of Residues	3
Details	binding site for residue LFA C 305

Chain	Residue
C	GLY111
C	GLY115
C	PHE140

---

site_id	AF8
Number of Residues	2
Details	binding site for residue LFA C 306

Chain	Residue
C	TYR162
C	LFA303

---

site_id	AF9
Number of Residues	1
Details	binding site for residue LFA C 308

Chain	Residue
B	LFA305

---

site_id	AG1
Number of Residues	3
Details	binding site for residue LFA C 309

Chain	Residue
C	PHE175
C	LEU181
C	LFA311

---

site_id	AG2
Number of Residues	2
Details	binding site for residue LFA C 310

Chain	Residue
C	MET112
C	PHE140

---

site_id	AG3
Number of Residues	1
Details	binding site for residue LFA C 311

Chain	Residue
C	LFA309

---

site_id	AG4
Number of Residues	4
Details	binding site for residue LFA C 312

Chain	Residue
C	GLY163
C	PHE166
E	TYR146
E	LFA305

---

site_id	AG5
Number of Residues	1
Details	binding site for residue LFA C 314

Chain	Residue
D	MET112

---

site_id	AG6
Number of Residues	5
Details	binding site for residue OLB D 301

Chain	Residue
D	TYR201
D	PHE205
D	PHE210
D	HOH428
E	LFA306

---

site_id	AG7
Number of Residues	3
Details	binding site for residue LFA D 302

Chain	Residue
D	THR21
E	GLY20
E	VAL47

---

site_id	AG8
Number of Residues	3
Details	binding site for residue LFA D 303

Chain	Residue
D	GLY163
D	ALA164
D	LFA311

---

site_id	AG9
Number of Residues	2
Details	binding site for residue LFA D 304

Chain	Residue
D	LEU181
D	PRO182

---

site_id	AH1
Number of Residues	4
Details	binding site for residue LFA D 305

Chain	Residue
D	MET17
D	GLY20
D	PHE24
D	ALA50

---

site_id	AH2
Number of Residues	3
Details	binding site for residue LFA D 306

Chain	Residue
A	LFA317
D	VAL167
D	LFA307

---

site_id	AH3
Number of Residues	6
Details	binding site for residue LFA D 307

Chain	Residue
D	GLY142
D	ASN149
D	ARG152
D	ASP159
D	LFA306
D	LFA308

---

site_id	AH4
Number of Residues	5
Details	binding site for residue LFA D 308

Chain	Residue
A	PHE175
D	THR134
D	PHE138
D	LFA307
D	LFA309

---

site_id	AH5
Number of Residues	6
Details	binding site for residue LFA D 309

Chain	Residue
A	VAL174
A	GLN177
D	PHE138
D	VAL174
D	GLN177
D	LFA308

---

site_id	AH6
Number of Residues	4
Details	binding site for residue LFA D 310

Chain	Residue
B	TYR7
B	PHE197
D	TYR114
D	TYR121

---

site_id	AH7
Number of Residues	1
Details	binding site for residue LFA D 311

Chain	Residue
D	LFA303

---

site_id	AH8
Number of Residues	1
Details	binding site for residue LFA D 312

Chain	Residue
D	ALA170

---

site_id	AH9
Number of Residues	5
Details	binding site for residue OLB E 301

Chain	Residue
A	PHE103
E	PHE205
E	LYS208
E	PHE210
E	HOH420

---

site_id	AI1
Number of Residues	1
Details	binding site for residue LFA E 302

Chain	Residue
E	LFA303

---

site_id	AI2
Number of Residues	4
Details	binding site for residue LFA E 303

Chain	Residue
C	LFA303
E	PHE138
E	LFA302
E	LFA305

---

site_id	AI3
Number of Residues	2
Details	binding site for residue LFA E 304

Chain	Residue
E	MET107
E	TYR114

---

site_id	AI4
Number of Residues	4
Details	binding site for residue LFA E 305

Chain	Residue
C	LFA312
E	ASN149
E	TYR162
E	LFA303

---

site_id	AI5
Number of Residues	1
Details	binding site for residue LFA E 306

Chain	Residue
D	OLB301

---

site_id	AI6
Number of Residues	3
Details	binding site for residue LFA E 307

Chain	Residue
E	LEU139
E	PHE140
E	GLY143

---

site_id	AI7
Number of Residues	1
Details	binding site for residue LFA E 308

Chain	Residue
E	TYR73

---

site_id	AI8
Number of Residues	3
Details	binding site for residue LFA E 309

Chain	Residue
A	LFA313
A	LFA314
E	PHE193

---

site_id	AI9
Number of Residues	1
Details	binding site for residue LFA E 310

Chain	Residue
E	ASP159

---

site_id	AJ1
Number of Residues	2
Details	binding site for residue LFA E 311

Chain	Residue
E	PHE175
E	LEU190

---

site_id	AJ2
Number of Residues	1
Details	binding site for residue LFA E 312

Chain	Residue
E	LFA313

---

site_id	AJ3
Number of Residues	3
Details	binding site for residue LFA E 313

Chain	Residue
C	PHE175
C	MET178
E	LFA312

---

site_id	AJ4
Number of Residues	15
Details	binding site for Di-peptide RET C 315 and LYS C 195

Chain	Residue
C	TRP76
C	THR79
C	MET83
C	MET116
C	TRP169
C	TYR172
C	TYR176
C	ASP191
C	PHE193
C	SER194
C	CYS196
C	PHE197
C	GLY199
C	HOH401
C	HOH410

---

site_id	AJ5
Number of Residues	16
Details	binding site for Di-peptide RET D 313 and LYS D 195

Chain	Residue
D	TRP76
D	THR79
D	MET83
D	MET116
D	GLY120
D	TRP169
D	TYR172
D	TYR176
D	ASP191
D	PHE193
D	SER194
D	CYS196
D	PHE197
D	GLY199
D	HOH401
D	HOH414

---

site_id	AJ6
Number of Residues	15
Details	binding site for Di-peptide RET E 316 and LYS E 195

Chain	Residue
E	ALA49
E	TRP76
E	THR79
E	TRP169
E	TYR172
E	GLY173
E	TYR176
E	ASP191
E	PHE193
E	SER194
E	CYS196
E	PHE197
E	GLY199
E	HOH401
E	HOH416

---

Functional Information from PROSITE/UniProt

site_id	PS00950
Number of Residues	13
Details	BACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYvDWaITTPIML

Chain	Residue	Details
A	ARG72-LEU84
E	ARG72-LEU84

---