6SQG
Crystal structure of viral rhodopsin OLPVRII
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005216 | molecular_function | monoatomic ion channel activity |
| A | 0006811 | biological_process | monoatomic ion transport |
| A | 0007602 | biological_process | phototransduction |
| A | 0009881 | molecular_function | photoreceptor activity |
| A | 0016020 | cellular_component | membrane |
| A | 0034220 | biological_process | monoatomic ion transmembrane transport |
| B | 0005216 | molecular_function | monoatomic ion channel activity |
| B | 0006811 | biological_process | monoatomic ion transport |
| B | 0007602 | biological_process | phototransduction |
| B | 0009881 | molecular_function | photoreceptor activity |
| B | 0016020 | cellular_component | membrane |
| B | 0034220 | biological_process | monoatomic ion transmembrane transport |
| C | 0005216 | molecular_function | monoatomic ion channel activity |
| C | 0006811 | biological_process | monoatomic ion transport |
| C | 0007602 | biological_process | phototransduction |
| C | 0009881 | molecular_function | photoreceptor activity |
| C | 0016020 | cellular_component | membrane |
| C | 0034220 | biological_process | monoatomic ion transmembrane transport |
| D | 0005216 | molecular_function | monoatomic ion channel activity |
| D | 0006811 | biological_process | monoatomic ion transport |
| D | 0007602 | biological_process | phototransduction |
| D | 0009881 | molecular_function | photoreceptor activity |
| D | 0016020 | cellular_component | membrane |
| D | 0034220 | biological_process | monoatomic ion transmembrane transport |
| E | 0005216 | molecular_function | monoatomic ion channel activity |
| E | 0006811 | biological_process | monoatomic ion transport |
| E | 0007602 | biological_process | phototransduction |
| E | 0009881 | molecular_function | photoreceptor activity |
| E | 0016020 | cellular_component | membrane |
| E | 0034220 | biological_process | monoatomic ion transmembrane transport |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | binding site for residue LFA A 301 |
| Chain | Residue |
| A | MET107 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue LFA A 302 |
| Chain | Residue |
| A | GLY111 |
| A | MET112 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue LFA A 303 |
| Chain | Residue |
| A | GLY20 |
| A | PHE24 |
| A | ALA50 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue LFA A 304 |
| Chain | Residue |
| A | THR21 |
| C | GLY20 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue LFA A 306 |
| Chain | Residue |
| A | LEU190 |
| A | VAL189 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | binding site for residue LFA A 307 |
| Chain | Residue |
| A | PRO182 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue LFA A 308 |
| Chain | Residue |
| A | ILE82 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue LFA A 309 |
| Chain | Residue |
| A | HOH443 |
| B | PHE138 |
| B | GLY142 |
| B | GLY143 |
| B | TYR146 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | binding site for residue LFA A 310 |
| Chain | Residue |
| A | PHE197 |
| C | PHE103 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue LFA A 311 |
| Chain | Residue |
| A | VAL135 |
| A | PHE138 |
| A | ASN149 |
| A | ARG152 |
| A | TYR162 |
| A | LFA317 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue LFA A 312 |
| Chain | Residue |
| A | LEU139 |
| A | GLY143 |
| A | LFA316 |
| B | LFA308 |
| site_id | AD3 |
| Number of Residues | 2 |
| Details | binding site for residue LFA A 313 |
| Chain | Residue |
| A | TYR121 |
| E | LFA309 |
| site_id | AD4 |
| Number of Residues | 3 |
| Details | binding site for residue LFA A 314 |
| Chain | Residue |
| A | TYR114 |
| E | PHE197 |
| E | LFA309 |
| site_id | AD5 |
| Number of Residues | 1 |
| Details | binding site for residue LFA A 315 |
| Chain | Residue |
| A | PHE193 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue LFA A 316 |
| Chain | Residue |
| A | LFA312 |
| B | LFA309 |
| site_id | AD7 |
| Number of Residues | 2 |
| Details | binding site for residue LFA A 317 |
| Chain | Residue |
| A | LFA311 |
| D | LFA306 |
| site_id | AD8 |
| Number of Residues | 11 |
| Details | binding site for residue RET A 318 |
| Chain | Residue |
| A | TRP76 |
| A | MET83 |
| A | MET116 |
| A | GLY133 |
| A | GLY137 |
| A | TRP169 |
| A | TYR172 |
| A | GLY173 |
| A | TYR176 |
| A | ASP191 |
| A | LYS195 |
| site_id | AD9 |
| Number of Residues | 2 |
| Details | binding site for residue LFA B 301 |
| Chain | Residue |
| B | HOH437 |
| C | HOH432 |
| site_id | AE1 |
| Number of Residues | 1 |
| Details | binding site for residue LFA B 302 |
| Chain | Residue |
| B | GLY20 |
| site_id | AE2 |
| Number of Residues | 1 |
| Details | binding site for residue LFA B 305 |
| Chain | Residue |
| C | LFA308 |
| site_id | AE3 |
| Number of Residues | 1 |
| Details | binding site for residue LFA B 306 |
| Chain | Residue |
| C | LEU11 |
| site_id | AE4 |
| Number of Residues | 2 |
| Details | binding site for residue LFA B 307 |
| Chain | Residue |
| B | GLY142 |
| B | TYR162 |
| site_id | AE5 |
| Number of Residues | 5 |
| Details | binding site for residue LFA B 308 |
| Chain | Residue |
| A | MET132 |
| A | LFA312 |
| B | LEU136 |
| B | PHE140 |
| B | LFA309 |
| site_id | AE6 |
| Number of Residues | 4 |
| Details | binding site for residue LFA B 309 |
| Chain | Residue |
| A | LFA316 |
| B | MET112 |
| B | LYS147 |
| B | LFA308 |
| site_id | AE7 |
| Number of Residues | 1 |
| Details | binding site for residue LFA B 310 |
| Chain | Residue |
| B | LEU4 |
| site_id | AE8 |
| Number of Residues | 2 |
| Details | binding site for residue LFA B 311 |
| Chain | Residue |
| B | LEU181 |
| B | PRO182 |
| site_id | AE9 |
| Number of Residues | 1 |
| Details | binding site for residue LFA B 312 |
| Chain | Residue |
| B | MET112 |
| site_id | AF1 |
| Number of Residues | 1 |
| Details | binding site for residue LFA B 313 |
| Chain | Residue |
| B | THR119 |
| site_id | AF2 |
| Number of Residues | 3 |
| Details | binding site for residue LFA B 314 |
| Chain | Residue |
| B | MET107 |
| B | TYR114 |
| B | LFA315 |
| site_id | AF3 |
| Number of Residues | 1 |
| Details | binding site for residue LFA B 315 |
| Chain | Residue |
| B | LFA314 |
| site_id | AF4 |
| Number of Residues | 9 |
| Details | binding site for residue RET B 316 |
| Chain | Residue |
| B | TRP76 |
| B | MET83 |
| B | MET116 |
| B | GLY137 |
| B | TRP169 |
| B | TYR172 |
| B | TYR176 |
| B | ASP191 |
| B | LYS195 |
| site_id | AF5 |
| Number of Residues | 5 |
| Details | binding site for residue LFA C 303 |
| Chain | Residue |
| C | VAL135 |
| C | PHE138 |
| C | LEU139 |
| C | LFA306 |
| E | LFA303 |
| site_id | AF6 |
| Number of Residues | 1 |
| Details | binding site for residue LFA C 304 |
| Chain | Residue |
| C | MET107 |
| site_id | AF7 |
| Number of Residues | 3 |
| Details | binding site for residue LFA C 305 |
| Chain | Residue |
| C | GLY111 |
| C | GLY115 |
| C | PHE140 |
| site_id | AF8 |
| Number of Residues | 2 |
| Details | binding site for residue LFA C 306 |
| Chain | Residue |
| C | TYR162 |
| C | LFA303 |
| site_id | AF9 |
| Number of Residues | 1 |
| Details | binding site for residue LFA C 308 |
| Chain | Residue |
| B | LFA305 |
| site_id | AG1 |
| Number of Residues | 3 |
| Details | binding site for residue LFA C 309 |
| Chain | Residue |
| C | PHE175 |
| C | LEU181 |
| C | LFA311 |
| site_id | AG2 |
| Number of Residues | 2 |
| Details | binding site for residue LFA C 310 |
| Chain | Residue |
| C | MET112 |
| C | PHE140 |
| site_id | AG3 |
| Number of Residues | 1 |
| Details | binding site for residue LFA C 311 |
| Chain | Residue |
| C | LFA309 |
| site_id | AG4 |
| Number of Residues | 4 |
| Details | binding site for residue LFA C 312 |
| Chain | Residue |
| C | GLY163 |
| C | PHE166 |
| E | TYR146 |
| E | LFA305 |
| site_id | AG5 |
| Number of Residues | 1 |
| Details | binding site for residue LFA C 314 |
| Chain | Residue |
| D | MET112 |
| site_id | AG6 |
| Number of Residues | 5 |
| Details | binding site for residue OLB D 301 |
| Chain | Residue |
| D | TYR201 |
| D | PHE205 |
| D | PHE210 |
| D | HOH428 |
| E | LFA306 |
| site_id | AG7 |
| Number of Residues | 3 |
| Details | binding site for residue LFA D 302 |
| Chain | Residue |
| D | THR21 |
| E | GLY20 |
| E | VAL47 |
| site_id | AG8 |
| Number of Residues | 3 |
| Details | binding site for residue LFA D 303 |
| Chain | Residue |
| D | GLY163 |
| D | ALA164 |
| D | LFA311 |
| site_id | AG9 |
| Number of Residues | 2 |
| Details | binding site for residue LFA D 304 |
| Chain | Residue |
| D | LEU181 |
| D | PRO182 |
| site_id | AH1 |
| Number of Residues | 4 |
| Details | binding site for residue LFA D 305 |
| Chain | Residue |
| D | MET17 |
| D | GLY20 |
| D | PHE24 |
| D | ALA50 |
| site_id | AH2 |
| Number of Residues | 3 |
| Details | binding site for residue LFA D 306 |
| Chain | Residue |
| A | LFA317 |
| D | VAL167 |
| D | LFA307 |
| site_id | AH3 |
| Number of Residues | 6 |
| Details | binding site for residue LFA D 307 |
| Chain | Residue |
| D | GLY142 |
| D | ASN149 |
| D | ARG152 |
| D | ASP159 |
| D | LFA306 |
| D | LFA308 |
| site_id | AH4 |
| Number of Residues | 5 |
| Details | binding site for residue LFA D 308 |
| Chain | Residue |
| A | PHE175 |
| D | THR134 |
| D | PHE138 |
| D | LFA307 |
| D | LFA309 |
| site_id | AH5 |
| Number of Residues | 6 |
| Details | binding site for residue LFA D 309 |
| Chain | Residue |
| A | VAL174 |
| A | GLN177 |
| D | PHE138 |
| D | VAL174 |
| D | GLN177 |
| D | LFA308 |
| site_id | AH6 |
| Number of Residues | 4 |
| Details | binding site for residue LFA D 310 |
| Chain | Residue |
| B | TYR7 |
| B | PHE197 |
| D | TYR114 |
| D | TYR121 |
| site_id | AH7 |
| Number of Residues | 1 |
| Details | binding site for residue LFA D 311 |
| Chain | Residue |
| D | LFA303 |
| site_id | AH8 |
| Number of Residues | 1 |
| Details | binding site for residue LFA D 312 |
| Chain | Residue |
| D | ALA170 |
| site_id | AH9 |
| Number of Residues | 5 |
| Details | binding site for residue OLB E 301 |
| Chain | Residue |
| A | PHE103 |
| E | PHE205 |
| E | LYS208 |
| E | PHE210 |
| E | HOH420 |
| site_id | AI1 |
| Number of Residues | 1 |
| Details | binding site for residue LFA E 302 |
| Chain | Residue |
| E | LFA303 |
| site_id | AI2 |
| Number of Residues | 4 |
| Details | binding site for residue LFA E 303 |
| Chain | Residue |
| C | LFA303 |
| E | PHE138 |
| E | LFA302 |
| E | LFA305 |
| site_id | AI3 |
| Number of Residues | 2 |
| Details | binding site for residue LFA E 304 |
| Chain | Residue |
| E | MET107 |
| E | TYR114 |
| site_id | AI4 |
| Number of Residues | 4 |
| Details | binding site for residue LFA E 305 |
| Chain | Residue |
| C | LFA312 |
| E | ASN149 |
| E | TYR162 |
| E | LFA303 |
| site_id | AI5 |
| Number of Residues | 1 |
| Details | binding site for residue LFA E 306 |
| Chain | Residue |
| D | OLB301 |
| site_id | AI6 |
| Number of Residues | 3 |
| Details | binding site for residue LFA E 307 |
| Chain | Residue |
| E | LEU139 |
| E | PHE140 |
| E | GLY143 |
| site_id | AI7 |
| Number of Residues | 1 |
| Details | binding site for residue LFA E 308 |
| Chain | Residue |
| E | TYR73 |
| site_id | AI8 |
| Number of Residues | 3 |
| Details | binding site for residue LFA E 309 |
| Chain | Residue |
| A | LFA313 |
| A | LFA314 |
| E | PHE193 |
| site_id | AI9 |
| Number of Residues | 1 |
| Details | binding site for residue LFA E 310 |
| Chain | Residue |
| E | ASP159 |
| site_id | AJ1 |
| Number of Residues | 2 |
| Details | binding site for residue LFA E 311 |
| Chain | Residue |
| E | PHE175 |
| E | LEU190 |
| site_id | AJ2 |
| Number of Residues | 1 |
| Details | binding site for residue LFA E 312 |
| Chain | Residue |
| E | LFA313 |
| site_id | AJ3 |
| Number of Residues | 3 |
| Details | binding site for residue LFA E 313 |
| Chain | Residue |
| C | PHE175 |
| C | MET178 |
| E | LFA312 |
| site_id | AJ4 |
| Number of Residues | 15 |
| Details | binding site for Di-peptide RET C 315 and LYS C 195 |
| Chain | Residue |
| C | TRP76 |
| C | THR79 |
| C | MET83 |
| C | MET116 |
| C | TRP169 |
| C | TYR172 |
| C | TYR176 |
| C | ASP191 |
| C | PHE193 |
| C | SER194 |
| C | CYS196 |
| C | PHE197 |
| C | GLY199 |
| C | HOH401 |
| C | HOH410 |
| site_id | AJ5 |
| Number of Residues | 16 |
| Details | binding site for Di-peptide RET D 313 and LYS D 195 |
| Chain | Residue |
| D | TRP76 |
| D | THR79 |
| D | MET83 |
| D | MET116 |
| D | GLY120 |
| D | TRP169 |
| D | TYR172 |
| D | TYR176 |
| D | ASP191 |
| D | PHE193 |
| D | SER194 |
| D | CYS196 |
| D | PHE197 |
| D | GLY199 |
| D | HOH401 |
| D | HOH414 |
| site_id | AJ6 |
| Number of Residues | 15 |
| Details | binding site for Di-peptide RET E 316 and LYS E 195 |
| Chain | Residue |
| E | ALA49 |
| E | TRP76 |
| E | THR79 |
| E | TRP169 |
| E | TYR172 |
| E | GLY173 |
| E | TYR176 |
| E | ASP191 |
| E | PHE193 |
| E | SER194 |
| E | CYS196 |
| E | PHE197 |
| E | GLY199 |
| E | HOH401 |
| E | HOH416 |
Functional Information from PROSITE/UniProt
| site_id | PS00950 |
| Number of Residues | 13 |
| Details | BACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYvDWaITTPIML |
| Chain | Residue | Details |
| A | ARG72-LEU84 | |
| E | ARG72-LEU84 |
