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6SNI

Cryo-EM structure of nanodisc reconstituted yeast ALG6 in complex with 6AG9 Fab

Functional Information from GO Data
ChainGOidnamespacecontents
X0005783cellular_componentendoplasmic reticulum
X0005789cellular_componentendoplasmic reticulum membrane
X0006486biological_processprotein glycosylation
X0006487biological_processprotein N-linked glycosylation
X0006488biological_processdolichol-linked oligosaccharide biosynthetic process
X0009060biological_processaerobic respiration
X0016020cellular_componentmembrane
X0016757molecular_functionglycosyltransferase activity
X0016758molecular_functionhexosyltransferase activity
X0042281molecular_functiondolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue PTY X 1601
ChainResidue
XVAL478
XTRP479
XILE524
XLEU527

site_idAC2
Number of Residues2
Detailsbinding site for residue PTY X 1602
ChainResidue
XVAL477
XSER481

site_idAC3
Number of Residues1
Detailsbinding site for residue PTY X 1603
ChainResidue
XSER481

site_idAC4
Number of Residues6
Detailsbinding site for residue PTY X 1605
ChainResidue
XTYR209
XASN212
XASN213
XASP216
XPHE153
XTYR160

site_idAC5
Number of Residues4
Detailsbinding site for residue Y01 X 1606
ChainResidue
HY012202
XPRO241
XTHR339
XSER374

site_idAC6
Number of Residues4
Detailsbinding site for residue Y01 H 2201
ChainResidue
HASN28
HTYR30
XILE230
XPHE277

site_idAC7
Number of Residues6
Detailsbinding site for residue Y01 H 2202
ChainResidue
HTRP102
HTYR103
XALA301
XGLN332
XY011606
XHOH1702

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH
ChainResidueDetails
HTYR203-HIS209
LTYR194-HIS200

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues83
DetailsTOPO_DOM: Cytoplasmic => ECO:0000305
ChainResidueDetails
XMET1-GLN35
XGLU126-THR145
XALA245-THR263
XPRO354-LYS356
XLYS420-HIS425
XPRO503-ASP508

site_idSWS_FT_FI2
Number of Residues220
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
XTRP36-GLY56
XPHE482-PRO502
XLEU509-SER529
XALA105-LEU125
XVAL146-GLY166
XVAL224-PHE244
XVAL264-GLY284
XLEU333-HIS353
XHIS357-VAL377
XASN399-LEU419
XLEU426-THR446

site_idSWS_FT_FI3
Number of Residues218
DetailsTOPO_DOM: Lumenal => ECO:0000305
ChainResidueDetails
XPRO57-THR104
XARG167-ALA223
XGLY285-GLN332
XHIS378-TRP398
XPRO447-SER481
XTYR530-LEU544

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PDB entries from 2024-10-16

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