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6SK8

DeltaC3 C-terminal truncation of HsNMT1 in complex with MyrCoA and GDCFSKPR substrates

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
Functional Information from PDB Data
site_idAC1
Number of Residues34
Detailsbinding site for residue MYA A 501
ChainResidue
AARG115
ACYS249
AVAL250
AARG255
ASER256
ALYS257
AARG258
AVAL259
AALA260
APRO261
ATHR268
ATYR117
AVAL271
APHE277
AGLN278
ATYR281
ATHR282
ALEU287
ATYR479
AHOH623
AHOH657
AHOH692
AGLN118
AHOH724
AHOH752
AHOH755
AHOH814
AHOH815
APHE119
ATRP120
AASN179
ATYR180
APHE247
ALEU248

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL A 502
ChainResidue
ALYS305
AHIS413
ALYS414
ASER415

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 503
ChainResidue
AHIS426
ATHR427
AGLN428
ATHR429
APRO430

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 504
ChainResidue
APRO126
ALYS289
AVAL291
ALEU478
ATRP481
ALYS482
ACYS483
AHOH702

site_idAC5
Number of Residues6
Detailsbinding site for residue CL A 505
ChainResidue
ALEU161
ALEU163
AARG202
ATRP206
AHIS211
AHOH906

site_idAC6
Number of Residues33
Detailsbinding site for residue MYA B 501
ChainResidue
BARG115
BTYR117
BGLN118
BPHE119
BTRP120
BASN179
BTYR180
BVAL181
BASN246
BPHE247
BLEU248
BCYS249
BVAL250
BARG255
BSER256
BLYS257
BARG258
BVAL259
BALA260
BPRO261
BTHR268
BPHE277
BALA279
BTYR281
BTHR282
BLEU287
BTYR479
BHOH627
BHOH649
BHOH669
BHOH677
BHOH809
BHOH820

site_idAC7
Number of Residues10
Detailsbinding site for residue GOL B 502
ChainResidue
BHOH717
AGLY275
BASN232
BVAL365
BMET366
BSER367
BGLU370
BHOH610
BHOH618
BHOH664

site_idAC8
Number of Residues8
Detailsbinding site for residue GOL B 503
ChainResidue
AASN232
AHOH604
AHOH637
BLYS241
BGLU274
BGLY275
BILE276
BHOH639

site_idAC9
Number of Residues8
Detailsbinding site for residue GOL B 504
ChainResidue
BPRO126
BLYS289
BVAL291
BLEU478
BTRP481
BLYS482
BCYS483
BHOH622

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU244-LYS252

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG
ChainResidueDetails
ALYS466-GLY472

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32111831","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32103017","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32111831","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"32103017","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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