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6RTN

Crystal structure of OXA-10 with VNRX-5133

Functional Information from GO Data
ChainGOidnamespacecontents
A0008658molecular_functionpenicillin binding
A0008800molecular_functionbeta-lactamase activity
A0017001biological_processantibiotic catabolic process
B0008658molecular_functionpenicillin binding
B0008800molecular_functionbeta-lactamase activity
B0017001biological_processantibiotic catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues1
Detailsbinding site for residue CL A 502
ChainResidue
AKJK506

site_idAC2
Number of Residues1
Detailsbinding site for residue CL A 503
ChainResidue
ALEU64

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 504
ChainResidue
AALA98
APRO118

site_idAC4
Number of Residues1
Detailsbinding site for residue CL A 505
ChainResidue
AARG250

site_idAC5
Number of Residues14
Detailsbinding site for residue KJK A 506
ChainResidue
AVAL117
AGLU129
AVAL130
ATHR206
AGLY207
APHE208
AARG250
ACL502
AHOH666
AHOH668
AALA66
ASER67
AKCX70
ASER115

site_idAC6
Number of Residues1
Detailsbinding site for residue CL B 801
ChainResidue
AARG109

site_idAC7
Number of Residues1
Detailsbinding site for residue CL B 802
ChainResidue
BGLU244

site_idAC8
Number of Residues1
Detailsbinding site for residue CL B 803
ChainResidue
BGLU171

site_idAC9
Number of Residues1
Detailsbinding site for residue CL B 804
ChainResidue
BLEU64

site_idAD1
Number of Residues3
Detailsbinding site for residue CL B 805
ChainResidue
ALYS61
AHOH724
BGLU62

site_idAD2
Number of Residues2
Detailsbinding site for residue CL B 806
ChainResidue
BALA98
BPRO118

site_idAD3
Number of Residues1
Detailsbinding site for residue CL B 807
ChainResidue
BARG250

site_idAD4
Number of Residues16
Detailsbinding site for Di-peptide KJK B 808 and SER B 67
ChainResidue
BPRO65
BALA66
BTHR68
BPHE69
BKCX70
BMET99
BSER115
BVAL117
BLEU155
BLYS205
BTHR206
BGLY207
BPHE208
BGLU244
BARG250
BHOH985

Functional Information from PROSITE/UniProt
site_idPS00337
Number of Residues11
DetailsBETA_LACTAMASE_D Beta-lactamase class-D active site. PaSTFKIPnAI
ChainResidueDetails
APRO65-ILE75

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Acyl-ester intermediate
ChainResidueDetails
ASER67
BSER67

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALYS205
BLYS205

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-carboxylysine => ECO:0000269|PubMed:11188693
ChainResidueDetails
AKCX70
BKCX70

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PDB entries from 2024-07-24

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