6RTN
Crystal structure of OXA-10 with VNRX-5133
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0008658 | molecular_function | penicillin binding |
| A | 0008800 | molecular_function | beta-lactamase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0017001 | biological_process | antibiotic catabolic process |
| A | 0042597 | cellular_component | periplasmic space |
| A | 0046677 | biological_process | response to antibiotic |
| A | 0071555 | biological_process | cell wall organization |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0008658 | molecular_function | penicillin binding |
| B | 0008800 | molecular_function | beta-lactamase activity |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0017001 | biological_process | antibiotic catabolic process |
| B | 0042597 | cellular_component | periplasmic space |
| B | 0046677 | biological_process | response to antibiotic |
| B | 0071555 | biological_process | cell wall organization |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | binding site for residue CL A 502 |
| Chain | Residue |
| A | KJK506 |
| site_id | AC2 |
| Number of Residues | 1 |
| Details | binding site for residue CL A 503 |
| Chain | Residue |
| A | LEU64 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue CL A 504 |
| Chain | Residue |
| A | ALA98 |
| A | PRO118 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | binding site for residue CL A 505 |
| Chain | Residue |
| A | ARG250 |
| site_id | AC5 |
| Number of Residues | 14 |
| Details | binding site for residue KJK A 506 |
| Chain | Residue |
| A | VAL117 |
| A | GLU129 |
| A | VAL130 |
| A | THR206 |
| A | GLY207 |
| A | PHE208 |
| A | ARG250 |
| A | CL502 |
| A | HOH666 |
| A | HOH668 |
| A | ALA66 |
| A | SER67 |
| A | KCX70 |
| A | SER115 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | binding site for residue CL B 801 |
| Chain | Residue |
| A | ARG109 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue CL B 802 |
| Chain | Residue |
| B | GLU244 |
| site_id | AC8 |
| Number of Residues | 1 |
| Details | binding site for residue CL B 803 |
| Chain | Residue |
| B | GLU171 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue CL B 804 |
| Chain | Residue |
| B | LEU64 |
| site_id | AD1 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 805 |
| Chain | Residue |
| A | LYS61 |
| A | HOH724 |
| B | GLU62 |
| site_id | AD2 |
| Number of Residues | 2 |
| Details | binding site for residue CL B 806 |
| Chain | Residue |
| B | ALA98 |
| B | PRO118 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue CL B 807 |
| Chain | Residue |
| B | ARG250 |
| site_id | AD4 |
| Number of Residues | 16 |
| Details | binding site for Di-peptide KJK B 808 and SER B 67 |
| Chain | Residue |
| B | PRO65 |
| B | ALA66 |
| B | THR68 |
| B | PHE69 |
| B | KCX70 |
| B | MET99 |
| B | SER115 |
| B | VAL117 |
| B | LEU155 |
| B | LYS205 |
| B | THR206 |
| B | GLY207 |
| B | PHE208 |
| B | GLU244 |
| B | ARG250 |
| B | HOH985 |
Functional Information from PROSITE/UniProt
| site_id | PS00337 |
| Number of Residues | 11 |
| Details | BETA_LACTAMASE_D Beta-lactamase class-D active site. PaSTFKIPnAI |
| Chain | Residue | Details |
| A | PRO65-ILE75 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Acyl-ester intermediate","evidences":[{"source":"PubMed","id":"11724923","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19860471","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1K54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2WGI","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"19860471","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2WGI","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-carboxylysine","evidences":[{"source":"PubMed","id":"11188693","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11724923","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19860471","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1E4D","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1K4E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1K4F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1K54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1K55","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1K56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1K57","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1K6S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2RL3","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
